RNA id: TU4402


Basic Information

Item Value
RNA id TU4402
length 973
RNA type TUCP
GC content 0.40
exon number 8
gene id G3117
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9925671 ~ 10136159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATGGTCCAAAGcttccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgactctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTAGCAGGTTCAATGAAATCAGTAGCTGCTGGATCCATCACTGCTATTTTCCTGGCTATCATATTCCTCTGTGCCTTCCTATTTATTAGAAGAAAGAGGTCCTGGAAACGAACCAGCGAGCCTGGAGAGAGACCAGACAACCAAGCTCAGGGTTCAGTGTATGACAGCCCTTCAGCTCCAGTCCAGAGAGACCAGACAACCAAGCTCAGGGTTCAGTGTATGACAGCCCTTCAGCTCCAGTGCAGAGAACTCCAGCAGAGCCACACGAAGACCTTTGCTATGCCAGCGTTAGCTTCTCTAAAAACCAGGAAGATGCTCTCTACTCCAACATCAGGCTAGCTCAGCGCCACAGAcacaaggaggaagaggaggacgaggaTGTGACATACACTGCTGTCAACTTTAAGAGTTCCAGTGCTACTACAGAATCAGGAAATCAAAAGGCTGTGGAGGATTTATCTGAACTGTACAGCACAGTCAGCAAACACCCAAGActttaaacacaacacagatCTGTGGTCTCTTTAAagggcagggttggtaatgttgaaaaactAGCAAGATTAGAAGGAAGCATCTCCTTGGTGCTctgtctaacccctccccctgccctctgggctcccccccacacacagacgtgcaccCCTGCCTCGCTGCTTTAGACAGTGTTCAAGCAGgttaaacacacatttatgaGTATTAGGATTGAGttgattt

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4454 lncRNA upstream 83586 9840788 ~ 9842085 (+) True G3163
XR_005639313.1 lncRNA upstream 242572 9680017 ~ 9683099 (+) True LOC120559553
XR_005639310.1 lncRNA upstream 281717 9640077 ~ 9643954 (+) True LOC120559541
XR_005639330.1 lncRNA upstream 286530 9638058 ~ 9639141 (+) True LOC120559601
TU4358 lncRNA upstream 304813 9574916 ~ 9620858 (+) True G3107
TU4512 lncRNA downstream 105268 10241427 ~ 10242838 (+) True LOC120559570
XR_005639321.1 lncRNA downstream 105280 10241439 ~ 10242805 (+) False LOC120559570
TU4390 lncRNA downstream 121767 10257926 ~ 10262973 (+) True LOC120559474
XR_005639327.1 lncRNA downstream 169629 10305788 ~ 10307665 (+) True LOC120559591
XR_005639317.1 lncRNA downstream 229303 10365462 ~ 10385779 (+) True LOC120559559
XM_039801115.1 mRNA upstream 108021 9802838 ~ 9817650 (+) True LOC120559412
XM_039801117.1 mRNA upstream 108021 9802838 ~ 9817650 (+) False LOC120559412
XM_039801118.1 mRNA upstream 108021 9802838 ~ 9817650 (+) False LOC120559412
XM_039801120.1 mRNA upstream 110427 9802838 ~ 9815244 (+) False LOC120559412
XM_039801262.1 mRNA upstream 138119 9781934 ~ 9787552 (+) True LOC120559524
XM_039801106.1 mRNA downstream 109034 10245193 ~ 10295893 (+) True LOC120559406
XM_039801184.1 mRNA downstream 119285 10255444 ~ 10262972 (+) False LOC120559474
XM_039801192.1 mRNA downstream 119285 10255444 ~ 10262972 (+) False LOC120559474
XM_039800898.1 mRNA downstream 135352 10271511 ~ 10285014 (+) True LOC120559277
XM_039811962.1 mRNA downstream 166533 10302692 ~ 10305020 (+) True LOC120565874
TU4435 other upstream 152736 9771575 ~ 9772935 (+) True G3148
TU4342 other upstream 398457 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 424542 9492309 ~ 9501129 (+) False LOC120559285
TU4189 other upstream 1032178 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1514736 8409857 ~ 8410935 (+) False LOC120565323
TU4393 other downstream 254009 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2060487 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 2549841 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 2656646 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2843856 12980015 ~ 12980108 (+) True trnai-uau

Expression Profile