RNA id: XM_039811962.1


Basic Information

Item Value
RNA id XM_039811962.1
length 961
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120565874
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10302692 ~ 10305020 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgaccggcacagTCGGCCATGAtgaaacacaacacagcacccacgggagcactaccaatatcCTGAGCCTCACAGCCCTTCAGCTgctgcttgagaATGGTCCAAAGcttccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgactctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGATTGTTGTAGCAGGGAATTTAACAATGATAATGAATATAATCAGGCTGACTGTGGTGGTCCTGATGCTGATTCCTCTGCTGCTCCTGAGTCTGTGGGCGAGGAAGAAGAAAACTCTGAGCTCCACCACTGGACCACATGAACCTGAAGAGAtagagATAGACTCTTGTCCTGCGTATGAGAACATCTCAGACACTGCAGCACAGACAGAAGACCCAGAGGAGCAGGAAGACCTGGTGTGAAGTCCAGTCAGATGCAGCTGAACCAGAGGCGGGACTCACCTGATGGAAACAAAGTAGTACGACATTGAAATATCCCTGAGGAGAGCGAGGCTGTGGAGGATGCGGGGGAAGTGGATACATTTACCTTCAACTCCAGAAGATTTTATTGTCAGTTTTGAGTAGCAGCAGCAGGTAGGAGTCAGCAGCAGCATGTAGCACAACGTTTAGAAGAATGTGGTGCTGGCAGCTTGAACTGAATCATGTCGAGGTGTCAAACATGATTTATTGTTCAGATCAGCTGATGCTCAGCTGCTGTGTGACTTACTGATGTATATTATATcattaatattttattaatatattttattaaaataatgattAATATTATTTTCTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4390 lncRNA upstream 39719 10257926 ~ 10262973 (+) True LOC120559474
TU4512 lncRNA upstream 59854 10241427 ~ 10242838 (+) True LOC120559570
XR_005639321.1 lncRNA upstream 59887 10241439 ~ 10242805 (+) False LOC120559570
XR_005639316.1 lncRNA upstream 179676 10119599 ~ 10123016 (+) True LOC120559558
TU4408 lncRNA upstream 187626 10112335 ~ 10115066 (+) False LOC120565738
XR_005639327.1 lncRNA downstream 768 10305788 ~ 10307665 (+) True LOC120559591
XR_005639317.1 lncRNA downstream 60442 10365462 ~ 10385779 (+) True LOC120559559
TU4517 lncRNA downstream 79127 10384147 ~ 10413449 (+) True G3214
TU4525 lncRNA downstream 109284 10414304 ~ 10414843 (+) False LOC120559244
TU4519 lncRNA downstream 110785 10415805 ~ 10421221 (+) False LOC120559244
XM_039801106.1 mRNA upstream 6799 10245193 ~ 10295893 (+) True LOC120559406
XM_039800898.1 mRNA upstream 17678 10271511 ~ 10285014 (+) True LOC120559277
XM_039801184.1 mRNA upstream 39720 10255444 ~ 10262972 (+) False LOC120559474
XM_039801192.1 mRNA upstream 39720 10255444 ~ 10262972 (+) False LOC120559474
XM_039800851.1 mRNA upstream 135078 10123099 ~ 10167614 (+) True LOC120559251
XM_039800838.1 mRNA downstream 15553 10320573 ~ 10459288 (+) True LOC120559244
XM_039801475.1 mRNA downstream 159801 10464821 ~ 10473545 (+) True LOC120559619
XM_039801484.1 mRNA downstream 159801 10464821 ~ 10473545 (+) False LOC120559619
XM_039801502.1 mRNA downstream 159801 10464821 ~ 10473545 (+) False LOC120559619
XM_039801493.1 mRNA downstream 159801 10464821 ~ 10473545 (+) False LOC120559619
TU4402 other upstream 166533 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 178574 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 529757 9771575 ~ 9772935 (+) True G3148
TU4342 other upstream 775478 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 801563 9492309 ~ 9501129 (+) False LOC120559285
TU4393 other downstream 85148 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 1891626 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 2380980 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 2487785 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2674995 12980015 ~ 12980108 (+) True trnai-uau

Expression Profile