RNA id: TU4517


Basic Information

Item Value
RNA id TU4517
length 213
lncRNA type intronic
GC content 0.54
exon number 5
gene id G3214
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10384147 ~ 10413449 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGaaaccattacattttggagtggATCCAAACTACGGTTTTCTAACAACAGAGGAGAGGCATCTTTAAAGACGACGTCCGTCTTCATTagagatgagaggagCAGCTATGAGTTTAACTGCAGCAGCGAGTGGATTTGTTGTCTTCcttctctctgtgtcaggtACTGTATATCTACAGTTACATTCATTCTTTAAAAGAGGGATTCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639327.1 lncRNA upstream 76482 10305788 ~ 10307665 (+) True LOC120559591
TU4390 lncRNA upstream 121174 10257926 ~ 10262973 (+) True LOC120559474
TU4512 lncRNA upstream 141309 10241427 ~ 10242838 (+) True LOC120559570
XR_005639321.1 lncRNA upstream 141342 10241439 ~ 10242805 (+) False LOC120559570
XR_005639316.1 lncRNA upstream 261131 10119599 ~ 10123016 (+) True LOC120559558
TU4525 lncRNA downstream 855 10414304 ~ 10414843 (+) False LOC120559244
TU4519 lncRNA downstream 2356 10415805 ~ 10421221 (+) False LOC120559244
TU4523 lncRNA downstream 5158 10418607 ~ 10421221 (+) False LOC120559244
XR_005639325.1 lncRNA downstream 8759 10422208 ~ 10424305 (+) True LOC120559586
XR_005639311.1 lncRNA downstream 33478 10446927 ~ 10449927 (+) True LOC120559544
XM_039811962.1 mRNA upstream 79127 10302692 ~ 10305020 (+) True LOC120565874
XM_039801106.1 mRNA upstream 88254 10245193 ~ 10295893 (+) True LOC120559406
XM_039801475.1 mRNA downstream 51372 10464821 ~ 10473545 (+) True LOC120559619
XM_039801484.1 mRNA downstream 51372 10464821 ~ 10473545 (+) False LOC120559619
XM_039801502.1 mRNA downstream 51372 10464821 ~ 10473545 (+) False LOC120559619
XM_039801493.1 mRNA downstream 51372 10464821 ~ 10473545 (+) False LOC120559619
XM_039811974.1 mRNA downstream 60657 10474106 ~ 10493894 (+) True LOC120565884
TU4402 other upstream 247988 9925671 ~ 10136159 (+) True G3117
TU4497 other upstream 260029 10123151 ~ 10124118 (+) False LOC120559251
TU4435 other upstream 611212 9771575 ~ 9772935 (+) True G3148
TU4342 other upstream 856933 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 883018 9492309 ~ 9501129 (+) False LOC120559285
TU5171 other downstream 1783197 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 2272551 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 2379356 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2566566 12980015 ~ 12980108 (+) True trnai-uau
TU5477 other downstream 2671674 13085123 ~ 13090460 (+) False pla2g6

Expression Profile