RNA id: TU4497


Basic Information

Item Value
RNA id TU4497
length 650
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC120559251
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10123099 ~ 10167614 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAGAATCtcagacctgagagagagagactcagctGTGTACAAGTTCATGTTCACAACAAACCAAGAAGGTGGAAGATATACCGGTTCACCTGGAGTCACTTTGTCTgtcacagcagGTCTCCAGGTGATATCACATTCTAACTGGCTGGAGTGTCGGAGCAGTTGTCGTCTACCTAATAATCCTTCCTATGTCTGGTACAAGAATGGACAGGAAATTCAGGCAAAAACATCTTATTATTTATACCCTGTGTATAATTCAGACAGCTATTCCTGTGCTCTTCAAGGATATAAGGATTTCCCCTCTCCTTCAGTGTGTGTCCAAGGTGAATCCTGCAACAGAGTGACGTACACTGACAGAAGCATCTGTGCCTCTAAAGGCTCTTCAGTGGACATTTCTTGCTTGTACAACAGCTACAATTATCCTGACAAATCAACATTCTGGTTCAGTCGTGAGCGTAATCATGGAGGGCAGAATCCTTCCCAGCCTGAAGACCTTAGTACAGACTCCCAGTATACAGGTCGTGTTCATgtagaaacagagagaggacgctccactctgagaatctctgacctgagagagagagactcagctGAGTATCACTTCAAGTTCATAACACCAAGATTTGAATGGAGGAGTTTACCTGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639316.1 lncRNA upstream 135 10119599 ~ 10123016 (+) True LOC120559558
TU4408 lncRNA upstream 8085 10112335 ~ 10115066 (+) False LOC120565738
XR_005639318.1 lncRNA upstream 15079 10107339 ~ 10108072 (+) True LOC120559560
TU4494 lncRNA upstream 22016 10100558 ~ 10101135 (+) False LOC120559494
TU4491 lncRNA upstream 23828 10098767 ~ 10099323 (+) False LOC120559494
TU4512 lncRNA downstream 117309 10241427 ~ 10242838 (+) True LOC120559570
XR_005639321.1 lncRNA downstream 117321 10241439 ~ 10242805 (+) False LOC120559570
TU4390 lncRNA downstream 133808 10257926 ~ 10262973 (+) True LOC120559474
XR_005639327.1 lncRNA downstream 181670 10305788 ~ 10307665 (+) True LOC120559591
XR_005639317.1 lncRNA downstream 241344 10365462 ~ 10385779 (+) True LOC120559559
XM_039811741.1 mRNA upstream 6652 10108094 ~ 10116499 (+) True LOC120565738
XM_039801214.1 mRNA upstream 21792 10098689 ~ 10101359 (+) False LOC120559494
XM_039811704.1 mRNA upstream 32995 10087142 ~ 10090156 (+) True LOC120565722
XM_039800789.1 mRNA upstream 139506 9644388 ~ 9983645 (+) True LOC120559226
XM_039801115.1 mRNA upstream 305501 9802838 ~ 9817650 (+) True LOC120559412
XM_039801106.1 mRNA downstream 121075 10245193 ~ 10295893 (+) True LOC120559406
XM_039801184.1 mRNA downstream 131326 10255444 ~ 10262972 (+) False LOC120559474
XM_039801192.1 mRNA downstream 131326 10255444 ~ 10262972 (+) False LOC120559474
XM_039800898.1 mRNA downstream 147393 10271511 ~ 10285014 (+) True LOC120559277
XM_039811962.1 mRNA downstream 178574 10302692 ~ 10305020 (+) True LOC120565874
TU4435 other upstream 350216 9771575 ~ 9772935 (+) True G3148
TU4342 other upstream 595937 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 622022 9492309 ~ 9501129 (+) False LOC120559285
TU4189 other upstream 1229658 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1712216 8409857 ~ 8410935 (+) False LOC120565323
TU4393 other downstream 266050 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2072528 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 2561882 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 2668687 12792805 ~ 12796367 (+) True LOC120555899
unassigned_transcript_57 other downstream 2855897 12980015 ~ 12980108 (+) True trnai-uau

Expression Profile