RNA id: XM_039811704.1


Basic Information

Item Value
RNA id XM_039811704.1
length 1321
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC120565722
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10087142 ~ 10090156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggctcaaaaaagATGCGCCCCAAATcttccctctgtgtcagtgagtcccTCTGGTGAAATCGAGGAGGGCAGTTCAGTGACTCTGACCTGTCAAAGTAATGCTTATCCAGCAGCTAACTACACCTGGTACAAGAAGAATGGAAATACAGAACTTCAACCTCTCAGTGAAAATACACCTCTTGTCTTCAGCTCCATCCAGTCCTCTGACTCTGGACAGTATTACTGTACAGCTGAGAATGAGCTGGGGAGGACATCTAGATCCATCTCTATTGATGTGAAATATGGTCCAAAGcttccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgaatctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACATCAGAACTCCACCTTACATCTGACTGTTGTAGCAGATAAATCAACAATAACACTGATGACAAACAGCATCAGGTTGACTCTGGTGGGGGTTGTGGGGCTGATTCCTCTGCTGCTTTGTTGTCGCAGGATGAGGAAGAAGAAAGCTCTGAGCTCCACCACTGAACCAAATGAACCCATAGAGACTgtggagTTAGACTCTTGTCCTGAGTATGATGACATCTCAGAGACTGCAGCACAGACAGAAGACCCAGAGGAGCAGGAAGACCTGGTGTGAAGGTCAGACAGTGCAGTCAAACCAGAGGGAGACTCACAtggaggaaaacaaaaagaagtCTTTAACTCCAAACGTTTTCATTCTCAGTTTTTTAGAAGCAGCAGGTAGCAGAAGATTAGAgaagaatgcagctttatttgtacctGTGCAGGTACATAACATAACTGAACTCAGTTCAGGATTTGACTTGGTATGCAAAGTGATATTTTATGTAGTAAATTACTTTTAAGAAATATTGTTCACCCTTTCACATCACACCTTTCCTGGCAGAGAAAGCCAGTAAAGTCCAACTATTCCACAGCATGTACAGTAGATCTTATATGGTATATTTTTACACATTGAAATACATGAGCTCAGCTCTGTCAAACTTTGCTAGTTGTTCATTTGTATTGAatgaattgtattgtattgcatGTATTGTAGTTTGAACATCATGCCAGTtccctctcactgctgcagagggAGATAGTGTTCAGGTGCAAGCTTTTGATTTCAGCTTTAAACAAACTCTTTTTGGGTTCATTCTTCAGAATGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4482 lncRNA upstream 5364 10024860 ~ 10081778 (+) True G3183
TU4484 lncRNA upstream 31082 10025780 ~ 10056060 (+) True G3184
TU4477 lncRNA upstream 86112 9999193 ~ 10001030 (+) True G3181
TU4417 lncRNA upstream 136958 9949535 ~ 9950184 (+) True G3130
XR_005639314.1 lncRNA upstream 141846 9945015 ~ 9945296 (+) True LOC120559556
XR_005639315.1 lncRNA downstream 6317 10096473 ~ 10098643 (+) True LOC120559557
TU4491 lncRNA downstream 8611 10098767 ~ 10099323 (+) False LOC120559494
TU4409 lncRNA downstream 9991 10100147 ~ 10132142 (+) True LOC120559494
TU4494 lncRNA downstream 10402 10100558 ~ 10101135 (+) False LOC120559494
XR_005639318.1 lncRNA downstream 17183 10107339 ~ 10108072 (+) True LOC120559560
XM_039800789.1 mRNA upstream 103497 9644388 ~ 9983645 (+) True LOC120559226
XM_039801115.1 mRNA upstream 269492 9802838 ~ 9817650 (+) True LOC120559412
XM_039801117.1 mRNA upstream 269492 9802838 ~ 9817650 (+) False LOC120559412
XM_039801118.1 mRNA upstream 269492 9802838 ~ 9817650 (+) False LOC120559412
XM_039801120.1 mRNA upstream 271898 9802838 ~ 9815244 (+) False LOC120559412
XM_039801214.1 mRNA downstream 8533 10098689 ~ 10101359 (+) False LOC120559494
XM_039811741.1 mRNA downstream 17938 10108094 ~ 10116499 (+) True LOC120565738
XM_039800851.1 mRNA downstream 32943 10123099 ~ 10167614 (+) True LOC120559251
XM_039801106.1 mRNA downstream 155037 10245193 ~ 10295893 (+) True LOC120559406
XM_039801184.1 mRNA downstream 165288 10255444 ~ 10262972 (+) False LOC120559474
TU4435 other upstream 314207 9771575 ~ 9772935 (+) True G3148
TU4342 other upstream 559928 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 586013 9492309 ~ 9501129 (+) False LOC120559285
TU4189 other upstream 1193649 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1676207 8409857 ~ 8410935 (+) False LOC120565323
TU4497 other downstream 32995 10123151 ~ 10124118 (+) False LOC120559251
TU4393 other downstream 300012 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2106490 12196646 ~ 12261491 (+) False LOC120567030
unassigned_transcript_52 other downstream 2595844 12686000 ~ 12686072 (+) True trnar-ccg
TU5353 other downstream 2702649 12792805 ~ 12796367 (+) True LOC120555899

Expression Profile