LOC120559494 (LOC103359075)


Basic Information

Item Value
gene id LOC120559494
gene name LOC103359075
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10098689 ~ 10132142 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4409
GTCCAAAGCTTCCCGCTGTGTCAGTGAGTCCCTCTGCTGAGATAGTGGAGGGCAGTTCAGTGAAtctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTAGCAGGTTCAATGAAATCAGTAGCTGCTGGATCCATCACTGCTATTTTCCTGGCTATCATATTCCTCTGTGCCTTCCTATTTATTAGAAGAAAGAGGTCCTGGAAACGAACCAGCGAGCCTGGAGAGAGACCAGACAACCAAGCTCAGGTCAGAAGAAGAGTTCAGTCAGAGTCCTCTCTCACCTGGAAACATTTGAATAATGCTTCATGTCCTCTGCTAAATTATAAGGTGCTGAGACAGGGACActgtataaaataatataaacctCTCCATCTACACAGACATGATAGGGTTTGTAAATAAAGAGGATTTAGGCAATCCTTGAATTATATTTCCCTCTGCTGGTGATCAGTAGGCATTACACCGACAAAAACAGAAGTGACCTCAAACCTGTGGTTCACTTTTTGGTTTTGAAAACGAGACTTGATCCCACAACAGAGAACATGAAATAAATGTTGAACCCTGACTTCCCCCCTTTGTGTGAGGTTCCCACCGTTGTGATTGTCTACCCCGCCCCTGATTGATTTCACCTGTTCTCCCCTCCCTCATGTAGAAATAGTCCTTGTCTCCCTTCCTCTTGTGCCagtttgtcttgtcttgtctccaTGTCAGTCTCGTCCTCGTTCCAGACAGGTTTTATTTACGTCATTAAGTTTGTTTGTTAAGATCCTCCTTGTGAactcttttctttgtttaaacatttgtcaagtaaagactttattttta
>TU4491
ATTAATGTGAATTATGCTCCAAAGcttccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgactctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAACCAAACACTGCTTCAAGGACCAGAGAGCATCTATCATTTCCCCTCCATCAGCTCTGAGGACAGAGGCAACTACCACTGCAAGTCTGAGAATCAGTTTGGACGGACCAACTCTACGTCTCTACTCTTAGATGTCCAGTGTAAGAAGAAAA
>TU4494
AACAGCATCAGGTTGACTCTGGTGGGGGTTGGGAGGCTGAttcctctgcttcttttttgtcgGTGGATGAGGAAGAAGAAAGCTCTGAGCTCCACCACTGAACCAAATGAACCCATAGAGACTgtggagACTCTTGTCCTGAGTATGAGGACATCTCAGAGACTGCAGCATAGACAGAAGACACAGAGGAGCAGGAAGACCTG
>XM_039801214.1
ATCCAGTCCTCTGACTCTGGACAGTATTACTGTACAGCTCAGAATGAGCTTGGGATGAGGACATCTGAATCTGTATTTATTAATGTGAATTATGGTCCAAAGCTTCCCGCTGTGTCAGTGAGTCCCTCTGCTGAGATAGTGGAGGGCAGTTCAGTGAAtctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTAGCAGATAAATCAACAATAACACTGATAACAAACAGCATCAGGTTGACTCTGGTGGGGGTTGGGAGGCTGAttcctctgcttcttttttgtcgGTGGATGAGGAAGAAGAAAGCTCTGAGCTCCACCACTGAACCAAATGAACCCATAGAGACTgtggagACTCTTGTCCTGAGTATGAGGACATCTCAGAGACTGCAGCATAGACAGAAGACACAGAGGAGCAGGAAGACCTGGTGTGAAGTCAAACCAGAGGGAGACTCACATggaggaaaataaaaagaagtcTTTAACTCCAAACGTTTTCATTCTCAGTTATTTAGAAGCAGCAGGTAGCAGAAGATTAGAgaagaatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4409 True 980 lncRNA 0.39 3 10100147 10132142
TU4491 False 286 lncRNA 0.48 2 10098767 10099323
TU4494 False 203 lncRNA 0.50 3 10100558 10101135
XM_039801214.1 False 703 mRNA 0.45 6 10098689 10101359

Neighbor

gene id symbol gene type direction distance location
LOC120565722 NA coding upstream 8533 10087142 ~ 10090156 (+)
LOC120559226 NA coding upstream 115044 9644388 ~ 9983645 (+)
LOC120559412 NA coding upstream 281039 9802838 ~ 9817650 (+)
LOC120559524 LOC103359075 coding upstream 311137 9781934 ~ 9787552 (+)
LOC120559363 NA coding upstream 469206 9590493 ~ 9629483 (+)
LOC120559406 NA coding downstream 113051 10245193 ~ 10295893 (+)
LOC120559277 NA coding downstream 139369 10271511 ~ 10285014 (+)
LOC120565874 NA coding downstream 170550 10302692 ~ 10305020 (+)
LOC120559619 NA coding downstream 332679 10464821 ~ 10473545 (+)
LOC120565884 NA coding downstream 341964 10474106 ~ 10493894 (+)
LOC120559557 NA non-coding upstream 46 10096473 ~ 10098643 (+)
G3183 NA non-coding upstream 16911 10024860 ~ 10081778 (+)
G3184 NA non-coding upstream 42629 10025780 ~ 10056060 (+)
G3181 NA non-coding upstream 97659 9999193 ~ 10001030 (+)
G3130 NA non-coding upstream 148505 9949535 ~ 9950184 (+)
LOC120559570 NA non-coding downstream 109285 10241427 ~ 10242838 (+)
LOC120559591 NA non-coding downstream 173646 10305788 ~ 10307665 (+)
LOC120559559 NA non-coding downstream 233320 10365462 ~ 10385779 (+)
G3214 NA non-coding downstream 252005 10384147 ~ 10413449 (+)
LOC120559586 NA non-coding downstream 290066 10422208 ~ 10424305 (+)
G3148 NA other upstream 325754 9771575 ~ 9772935 (+)
G3091 NA other upstream 566713 9472100 ~ 9531976 (+)
LOC120559285 LOC103373854,LOC100706414,LOC103154483,LOC106948732,LOC106929595 other upstream 585996 9492263 ~ 9512693 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other upstream 1186781 8891315 ~ 8911908 (+)
abcc10 abcc10,LOC107102248 other upstream 1396234 8670171 ~ 8702455 (+)
LOC120559474 NA other downstream 123302 10255444 ~ 10262973 (+)
LOC120559244 NA other downstream 188431 10320573 ~ 10459288 (+)
G3115 NA other downstream 258026 10390168 ~ 10391345 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other downstream 2064504 12196646 ~ 12264004 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 2172568 12304710 ~ 12322209 (+)

Expression


Co-expression Network