RNA id: TU3639


Basic Information

Item Value
RNA id TU3639
length 473
RNA type TUCP
GC content 0.41
exon number 2
gene id LOC120565323
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8401715 ~ 8415076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAAGGTTTCGCCACTCTGACCTGAATCAGAGAATTGAGGTAGAAGACGGAGATGATGTCACTCTTCAGGGTCGTCTTGATAACTCCACCAACTTGTCTTCCTACACCTTCGATGTGGCGAGACTCGACCTCGGTATCTATGGTGATGTCTACTCTTATCGACGGGGAAAGGACCACCTGGATGACCAGATGGATCGATACAGAGACAGAACAACTCTCAACCATGAAGACCTGATCAGAGGCATCGTGACTCTGAAGATCTCCTCAGTAACTCTGTCTGATAGTGGATCATACAAAGTCTACGTCCCAAAACTGGAAGCCAGTTTTATCGTTAACATCATTGTTGCACCCAAAGGCCAATTGAGCGAGACGAAGAGAAATGATCCAACCACAACTAGTCCTCCGGCTACCAGTCCTGGTAAATGTCTGATCAGTTGTCTAGAAGTCTGTACCCAATAGTTTTAAATTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3616 lncRNA upstream 84598 8099027 ~ 8325259 (+) False G2595
TU3618 lncRNA upstream 84598 8104594 ~ 8325259 (+) False G2595
TU3644 lncRNA upstream 106533 8194013 ~ 8303324 (+) True G2602
TU3657 lncRNA upstream 111907 8167739 ~ 8297950 (+) True G2614
TU3659 lncRNA upstream 111907 8288596 ~ 8297950 (+) False G2614
TU3745 lncRNA downstream 49152 8460087 ~ 8463648 (+) False G2685
TU3746 lncRNA downstream 49152 8460087 ~ 8463648 (+) True G2685
TU3748 lncRNA downstream 56126 8467061 ~ 8495618 (+) True G2687
TU3730 lncRNA downstream 59619 8470554 ~ 8509264 (+) True G2670
TU3752 lncRNA downstream 63962 8474897 ~ 8477720 (+) True G2689
XM_039800189.1 mRNA upstream 29157 8372857 ~ 8380700 (+) True LOC120558872
XM_039800295.1 mRNA upstream 194816 8211071 ~ 8215041 (+) True LOC120558930
XM_039800252.1 mRNA upstream 294663 8109343 ~ 8115194 (+) True LOC120558905
XM_039804264.1 mRNA upstream 345357 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA upstream 345357 8052523 ~ 8064500 (+) False ccsapa
XM_039803257.1 mRNA downstream 152113 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 206448 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA downstream 206448 8617383 ~ 8643702 (+) False socs7
XM_039816364.1 mRNA downstream 206448 8617383 ~ 8643702 (+) False socs7
XM_039801581.1 mRNA downstream 237124 8648059 ~ 8669290 (+) False sp2
TU3609 other upstream 318352 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 461604 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 710317 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1196301 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 1196823 7212963 ~ 7213034 (+) True trnae-uuc_48
TU4189 other downstream 480513 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1061165 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1081374 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1360640 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1514736 9925671 ~ 10136159 (+) True G3117

Expression Profile