RNA id: XM_039816364.1


Basic Information

Item Value
RNA id XM_039816364.1
length 3776
RNA type mRNA
GC content 0.56
exon number 8
gene id socs7
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8617383 ~ 8643702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGAGGAGGAGCGGGTGGGGCCTGGCTGGGAACACAGAGGCAGACTGTGGTCACTGACCGGAGACTCTACTGGCTTTTTATTCGACTCAAATCCGACCGCATGTCTGACCCAGGGGTCCGCCTGCTGCCGGGAGCAAACGGCACCCATTTCGCCAAAATCTGACGGATGgatgctgtgctgtgctgtcgtAGAAGAGGAGGGATGAACAAAACGCGTGATATATTGTTTGGCAATTTCGCTCATCGCCTATTTATGGGAGGCAGCGGCGGCTCGGCCCGTTCTTTATTATAGGAAACGGATCTCCGCGGTTAGCTATGTGAAGAGCAGATCGCCCCAATAATTCTCGTTTCGCGATCCTGAGGAGTAATTATGAACAACGCGCAAGATATGTCGCCCGATTTTGTGTTGATGCGCCTGGTTTCCGCGGCCGAGGACGACCGCTTGGACGCGGAAAACGGGAATCTGCCGCCGGGAGGAGTTGTGGCAGGGCTGGGGAAGGAGGTCCTGGCTCACGGCGGCGTCAAAGCGGGTTTGGATATCAGCCGAGATCCGACTGCGGGCCTCGAGCATCCTAGCGGCCGCCTGAACAAAGCCCAGCCGAGCGGCGAGGGCACGGCTGCACCTGACTCCGGGGTGACGGAGAGCCGAGCCCCGCTGTCCGCGCCTCCTCCGCCGCAGAGCCCCATGATGGAGGCCCAGGGATTTGACTTCGCTCCCAGCCCCGGCCTACGGCCTCAGCTGCTCGTCTTCTCCAATATAATGCGGAACGGAGAAGGGATTTTAGAATTAGACCGTCGGAATCAGCCGAGGGATGCTCTGGGTTTGGACCAGAGCCCGGGATCTGCAGGCTGCTCCGACCCGGCTGTCAATAACAACACTCGGAGTCCCGGAGacgttcagcagcagcagcagcagcagcagcagcagcagagcctgCTGGACCGGACCTGGGGAGCGCATCCGCCGGTTTCTGTAACCGCGGAGATGCAGGGAGCTGCGGAGCTATGCCGCCGGCACCGACTCATCACTACCCCGCCCGAGTGGCCCTTGTTGTCGGAGACATCCGGCCCTCTCACCGTGATTGACTCTAAATGGGGATGCGCCTCCAGGGACAGAGAGGGAGCCGTGTTTGAGCTGGCCCGACGGTTCGGGGAGCTGGGGGTCGGCGCGGTACCCAAGATGCTGTTCAAAGCAGGGGAGCTCCCGCAGTGTTCGTGTCAGGGTGCGCACAGGCCGGCGGGAGGGGGAGTGGAGCCCGGGGATGACCCGACGGAGACCAGCGATGCTTTGTTGGTGCTCGAGGGGCTGGGAAGCGGGGATGTAGCAGGCCTGGCCATGGACGAGTGTCCGGAGGGCGAGCCGGACGATGAGAACGGACGCCGTGAGTTTTTACTCAACAGGAAAAGGGAAATAGTTCAGAAAATGTCCGGGGCTTTCTCCATCGGCAGCTTCCAAGTGGAGCTGAGGAGGCAGGTGGAGGGGACCGAATCGGCGCCAGGGGCAGCGCACCTTGGCGCGCAGGTGTGCAGCCTCCACGGGAACATAACCAGCCGGCTCTCGCAGCAGGTAAACTCCGGCGATCCGGAGGTTGTCGCCCAGGTTTCAGCCACGTCACCTACACCGGTCCAGAGCTCACCGTGGGCCACAAGCCCGAACCTGAGCCAGGCGTCGACACCCAGGAGGCGGCCGGAGCGGTGCGCCAGCGCGCCGCGGACTCCCACAGGCAGCTGGGCCGCGGGTGGAGAAAAGGCGCTCAAAGTTCCGGGGAAGTCCAAAAAGGGCTCGTTAAAGATCCGCCTGAGTAAACTGTTCCGGACTAAAAGCTGCAGCGGCTCCAATCACCTGCTGGACAAGAGGCCCTCGGTGACCTACTCGGTGTCTTCTGCCGGGAGTCTGGTGGACATGGCGAGCCACGCGGGAGCTGAGCAAGACGCAGACAGCCACAGCCAGCCCAGACTGACCAGGGCCCACAGTGCCTTCTCCCCCGcctccctctctgcctccctctctgcTTTCACTGAATCCTTCCTCCGGGCCCTCCCTCATTCGACCCCATCGCCGGCTGACGCTGCACCCCCTTCCAGACAGGTCCCGCCCCCCATGTTGTGCGCCCTGCGGCGGTCTGAAGCCAGCAACTTCACCgccagtctgagagagctggagaaGTGTGGCTGGTACTGGGGTCCGATGAACTGGGAGGACGCAGAGATGAAGCTGAAGGGGAAACCGGACGGATCCTTCCTGGTCCGAGACAGTTCAGACCCCCGGTACATCCTGAGCCTCAGCTTCAGGTCGCAGGGagtcacacaccacacacgcatGGAGCACTACCgagGGACGTTCAGCTTGTGGTGCCACCCGAAGTTTGAGGACCGCTGCCACTCGGTGGTGGAATTCATCGAGCGGGCCATCATGCACTCCAAGAACGGCAAATTTCTCTACTTCCTCCGCTCCAGAGTCCCAGGGCTTCCTCCCACCCCGGTTCAGCTGCTGTATCCTGTATCCCGCTTCAGCAACGTGAAGTCACTACAACATCTCTGTCGCTTCTGCATCCGACAAATGGTCCGCATCGACCACATCCAGGAGCTTCCACTGCCCAGACCACTAATATCCTACCTGAGTAAGTTTTATTACTACGACCCTGAGGAGGAGACGTACCTGTCAATCAAGAGCATCCGGAGAGCGGTGGGAGCCGAGCAACAGGCCGAGTCGCAGACGTAGCAGCAGAGATCTTCTCAGCTCAAGTTTCTGTATGGAGGACTGATCTGTATGCTACTGGACTGCTAGTCTTCCagcatcagccaatcagagtcctCTGGAAATCTCTCCAGCTGGACTAGGATGGACCTGCCTCTCTCTTGACTTGGACTAACAAAAAGAGGGACGTGTGTTTGCGGCCAGATGGCGGGAAAACTGTCAATGAGACGTTCAGGTGCAGAGGACTCAGCCTCGTCTTCAGAGGGACTGCAGAGATGTTCTCACCTGCAGACATGTCGGTTTGAAACAAAAGGGACAATTATGAACTTGATTTGCAAATTTCCTGAAGCTACTGAACTGGACTTTTAAAACACAATGCACTGGTCAATTTGTACAACTGTTGTTTGCTGCCGTTTACTTGTTTTTCCTTCTATTCTGTCAAAAAGAGGGTTTTTTTTGGATTAAAAGTTGCCCTCGGgagagatatacacacagaggcAGGGCAGCAGAGGCCCTTCCCCGAGCATTCAGGCAGTCGGGGGGGGggttaagagagacaggtcgcCATGTTGGAGGCcctatgatcttttttttttctctctggaaATCTCAAAATTACAGCAGTGCCAATAAAGTGCTTCTTCTACGGGGATGGATTTGATAAAACTTTTACAACTTCTCAACTTTAAGTACTATCTGGAAGATTTTCATTTGAATAAATGTCTTTAAAGTCACTATCTATCGCCAAGTGAAGATACACAATGGTGACTCAGCCTATGGCTCACTGATGGAAGCCCTTGCATTTGCATTATTATGagtacagtggtgctcataagtttatgaacccatgctaaagttgactaaaaataggaatacaaaaatcatcttttggaaatttatcttaatgccttaattaaaaaaatgaggaaaaatccaacctttaaggacgccaattttttttgtgaattaataatgtatcgtaaattcATTAATGTCATGTCAAAATACAggggcaggcagatgtttatttttaaaggccagttatttcatggatccaggatactatgcatcatgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3780 lncRNA upstream 22397 8594722 ~ 8594986 (+) True G2715
TU3768 lncRNA upstream 74786 8535766 ~ 8542597 (+) True G2704
TU3726 lncRNA upstream 96575 8486118 ~ 8520808 (+) True G2666
TU3756 lncRNA upstream 104460 8485742 ~ 8512923 (+) True G2692
TU3752 lncRNA upstream 139663 8474897 ~ 8477720 (+) True G2689
TU3779 lncRNA downstream 733 8644435 ~ 8645116 (+) True G2714
TU4083 lncRNA downstream 51018 8694720 ~ 8701856 (+) False abcc10
TU4084 lncRNA downstream 51018 8694720 ~ 8702455 (+) False abcc10
TU4085 lncRNA downstream 51018 8694720 ~ 8701905 (+) False abcc10
TU4106 lncRNA downstream 76538 8720240 ~ 8720660 (+) True G2909
XM_039803257.1 mRNA upstream 42056 8563048 ~ 8575327 (+) True mrpl45
XM_039811024.1 mRNA upstream 202307 8401715 ~ 8415076 (+) True LOC120565323
XM_039800189.1 mRNA upstream 236683 8372857 ~ 8380700 (+) True LOC120558872
XM_039800295.1 mRNA upstream 402342 8211071 ~ 8215041 (+) True LOC120558930
XM_039800252.1 mRNA upstream 502189 8109343 ~ 8115194 (+) True LOC120558905
XM_039801581.1 mRNA downstream 4357 8648059 ~ 8669290 (+) False sp2
XM_039801588.1 mRNA downstream 4422 8648124 ~ 8669290 (+) True sp2
XM_039808749.1 mRNA downstream 26469 8670171 ~ 8694202 (+) False abcc10
XM_039808730.1 mRNA downstream 26469 8670171 ~ 8694202 (+) False abcc10
XM_039808757.1 mRNA downstream 26472 8670174 ~ 8700617 (+) True abcc10
TU3639 other upstream 206448 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 525878 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 669130 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 917843 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1403827 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 247746 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 828398 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 848607 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1127873 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1281969 9925671 ~ 10136159 (+) True G3117

Expression Profile