RNA id: TU3752


Basic Information

Item Value
RNA id TU3752
length 2592
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G2689
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8474897 ~ 8477720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggcgagagttactctttaatttaccttaactgaacagcttcggagtcattggaacggttatatgactttttttcgggaTGAATGGTGGTCatctcgctcccccctagcgcctgtgagcggaaaaaccagcGTTGCAACTTTATGATATCAGATCTCACGaggtaacaaattgcttcatgtcactgcacacatacgcccattcaggaaccggctaacaaggtagcgatggagtttttcacactatcgtcatggctgagccggcaaaaaaagaagcagaaagctaggaaagcatcgtcggaggaacagaggaagaggaaacggcagactgaccgagagagGAGTCACACACGAGTAAAAATAGgtgctgccaaatatctattctgaagctgtaggggggagctctatagagaaacctgccagcaaaaagagagaaaacagcgAAGAGATGGCCTAAATTGCATAGCGCCTCTTTAATCAagtaaaaaacacattcattccACAAGTTGAAATATTGTTATTCCCTCAACTGTAAATCTGATGAGCAAAACAAGTCCCaaaccacagcagcagctgtgGAAATAACAGGAAATATTAAACTACACGATGTTAAGTCTCTATGCAGACACCTAGCTTTAGAAGAGGGGTGTTGAAACGTTAAGAGGAGCCAAACAAATCACGTCACGAGCAGGTGAGATCCCCGGGGAGAAatgtctccatgtttgttgctTTATGGCTGCGTTGCACAAAAGACATTCAGAGATTACGAGTCAAAACTTGCTTTGGCCTCCGGACGAACATTCCTCCAGATGAGATGTTGTCTTCATCACgtttgtctgtgttttaagcccccccaACGTATTCCTTCCagacagcgctgcctggaatcactaggattaggcaatggttagggttaggtgccttgaagtcaacggttgcagcgctgcctggaaggagacgttggggggcttaaaacaccacaaCATCGAGGCTTCATCACTGGGACGGTTCAAATACTGAACACACTCATATCctcaacatatatatacacacagtaatACACGCTCAGTGTTGAAATGCTCGGTCAAACGATGGATTAGTCGATCAACATAGCTGAGTAGAGAGATGACAGGATATTAAAGGAGAGAGAATACACTAAATTATATATCATCTTCATGTTAAACTATTATTCAAAAATAGTCGTTGGTAGCAGCTCTGGGTCACTGAAACTGATCTACATAAACACATTGTCttctgtgatgatgatgatgatgatgatgatgacgacacACTATGTGAACAGCGCCGTTTGGATCCACCCGGGTACtaaacacattaaacacaacaagACCCTATCTGAGCAAGTCAGAGTAGTTCAGGtttataaaatggaaatatatctatatctacTATTACATTCTCTGCATTTggccaaaaatataaaacacaccCAGAAATTTGAGGTACATCATTGGACACTGGGTGTGCGGAAGAACTGTATTTGTATCTTTAAGTGTGCCTTTTAAAGCACATATAAGATGTAACTTGATCACTTTATAACCAGACAGACTGCAAAGTGATCCTGAACATTccatattaaagtgctcatgttatgctcattttcaggttcataaattgtatttagaggttatatcaataggtttacatggtttaattttcaggaaacaccatattttagttgtactgcaaattgctgcagctcctcttttctccctgtgtgttgagctctgttttagctacagagtgagacatctcacttctgttccatctttgttgggagacgcacatgcacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtagctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtagctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtctgtctctgaagtaaaggctggactacaatagagctgtttggagcagttggtgaacagtgttttctgttggagatggtaagtccctttgggggggactttgggctttttcactttgtaaacctataacgtgcacaaaaaagatagaGACTTGAATActgagagctgtgtgtgtgtttacagtgcaGGTGGTTGTACCTGTTCTGCGTCCAGGTGGCTCTCTGGCGGGAGGTGGTGGTCTGCTGCCCtgctgggaggaggaggagggagagggagagggaggagggggaggagctTGGCTGCGTCCTTGGCTGCCGCCTCCCGAGGTGTGTTTTTTGTGCAGGGAGTTGTGCCTCTGTGGCAGCTCCGGAGCCCCGGCCCCGTCTACGCTGGACGCCCCGTTGGAGACGTTGCCCGATGCGTGCGGCCTgtaggggggaggagggggaggagccGAGGAGCCACCCGTTTGCGGCCTGCTGGAAGACGGAGGCGGCTTCACGGAGCTGGGAGGGGTCGGGCCTCTGCTGGGCATCGGTGGGAGGGGCTTCtctctaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3745 lncRNA upstream 11249 8460087 ~ 8463648 (+) False G2685
TU3746 lncRNA upstream 11249 8460087 ~ 8463648 (+) True G2685
TU3700 lncRNA upstream 35645 8289896 ~ 8439252 (+) True G2646
TU3659 lncRNA upstream 176947 8288596 ~ 8297950 (+) False G2614
TU3677 lncRNA upstream 221798 8251948 ~ 8253099 (+) False G2628
TU3756 lncRNA downstream 8022 8485742 ~ 8512923 (+) True G2692
TU3726 lncRNA downstream 8398 8486118 ~ 8520808 (+) True G2666
TU3768 lncRNA downstream 58046 8535766 ~ 8542597 (+) True G2704
TU3780 lncRNA downstream 117002 8594722 ~ 8594986 (+) True G2715
TU3793 lncRNA downstream 162341 8640061 ~ 8643143 (+) False socs7
XM_039811024.1 mRNA upstream 59821 8401715 ~ 8415076 (+) True LOC120565323
XM_039800189.1 mRNA upstream 94197 8372857 ~ 8380700 (+) True LOC120558872
XM_039800295.1 mRNA upstream 259856 8211071 ~ 8215041 (+) True LOC120558930
XM_039800252.1 mRNA upstream 359703 8109343 ~ 8115194 (+) True LOC120558905
XM_039804272.1 mRNA upstream 410397 8052523 ~ 8064500 (+) False ccsapa
XM_039803257.1 mRNA downstream 85328 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 139663 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA downstream 139663 8617383 ~ 8643702 (+) False socs7
XM_039816364.1 mRNA downstream 139663 8617383 ~ 8643702 (+) False socs7
XM_039801581.1 mRNA downstream 170339 8648059 ~ 8669290 (+) False sp2
TU3639 other upstream 63962 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 383392 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 526644 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 775357 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1261341 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 413728 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 994380 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1014589 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1293855 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1447951 9925671 ~ 10136159 (+) True G3117

Expression Profile