RNA id: TU3746


Basic Information

Item Value
RNA id TU3746
length 3431
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G2685
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8460087 ~ 8463648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCCCATATTTATTTGAAACGATTTCAAAATGGTAAAAACATGGTTGATTAACATGAAATGACCACAGGGTTCCTGCTCCGAGAGCGGACGCGGTGACGACAGGAGGAGACACAAAACGTGTCGGGAGTGAAGTTCAATTGTGTTTTCATCTGCCACCCACACCTTCACTACAGAACCCACCACACAGATTTATACAAACAGGACCCCCCAAAATGTTGGCTCGTtggcaaaaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcttatTCACCCTGAAGGCCAAAACATCCAGAGACGTGCTACAGAGAGTCCATCAGACCGGGAACATTGTTATAATCATTTCTCTTTCCTATATTACAAGCTTTTTACAACATAAAAATAGATCAATAACTATGATTACCATACTCCTTAATGTAAATATACAatatttattgcattttcaaatAAACTTGTTTCTTATTTACCTTGTTGTCGCCATCTTTCCCCCCCTAAAAATGAACCAAAGATAATAAAAAGCACTGGTACCGATGAGTGAGAACAGATGTGTGTAAGGCTggaccagcagggggcgctgcagCACTGAGAATCTCAGCATTACTTTTTGTTCATCTTAGGTTGAATATGAAGTGATATTAGTGttttaaagaaaagtaaaataacCTCCACCTGCTTTAACAGTTTCTCTGGCACTtaagtgttcattttttttcttcttcttttggttAGCTGCTACCAACTACAATCTGCACAAACTGCTCCTTGCATagcaataaaacaatatatatatcgTCCTCCTCTGGCTGTACagtcctatcaaataaaaagGGACACCAGTAGCAAAGTAGTGATGGGGAGGATTCAGAACAGAGTTGAGCTTTTAGACCGACTTGTGTGGACAGAAAGTTAGATAAAGGATCCCTTATAAACACCTCCCACACTCTGCACTGCAAACCTACAGctaaggctacatctacactgctatggtttatttttatttgtttttaagcagcgtccacacaacacacagtttaagctccagtagcagaactaatctaacctgactccgccagatggattcgcatttgctcggcatatccatctgggaactttccgttggagaacttttgggaagggggcgaaaatcctggttagccgattggataaaccatctgtctatctaccacccatagttggtgatagacggggccaaatcaaccaatcagatcaaactcttgccgaaaccagtcgggagaagagcaaaaacatcttttcctccgagaaaagcctccagtgtcgttttttttttttttgctcttctttcaaagaaggaatactttctaattcggataaaacttgctgttatagctacgctcatctcaatccgttgtttagactgaacggtcgcttctcgttgcgtcacaccatCTTAATCTCCATCCATACTAACACGTCTGACAACGCATATCACATGACCGTTCACGCACACGCTGGGCACGTGCGTGACGCTGTAAACAGGAAGCCGATTGTCTGACGTTGCTCTGCGGTTGGTAATAACGGACGTAGAAGTTGAAAACACAGAAActactttggagaaagaacaacaagggggaaaagtaagagcagggattAATTAGCTTGGGGCGACAACGAGGTGGAACGGTTACCGAAAGGTCTGTACGCTACCTCACCGATAAGACTGACGGACGTGCGTCCTCGTTTCCAAGCGTCTCCGTTTGTGCCGGTCCAGACTAGTACGCAACCCCCCCGAGTGTTTAAACCATAACAGAGCAGCAGtgttttccaaatgtctccgttttaggggcAGTAGAGGGGGCGCGAGGCGAAAACGTAGCAAAAGAAGAACCGTAGTAGTGCAGATGTAGCTTAAATCAAACATACTTGGGTATGTACACAATGTACacaacgtacacacacacattaacttaGTGTTGTTACCTCACAGGAACCCCGGTGGGTTCGGAGAGAGAGACGCGGACTACATGAACTACAGTTTGTCAAAcacaaaaaaggtaaaaattaGGAATGAACCCTCTTAGTTTTTCTAGATTATTTTTTGAActgtgacccccccccccccagggtcTTCTGTGGTCATAAGTGCATAAATAAGATATCATGCACAGTGTCTCGGTTTAGCAGTTTATCTGCCGTGCAACATCGCCTGAAGATGGAAATATAAAACACCCCTGACTTAAGGAATGTAGGggatacacaaaaaaaaaagaaaaagaagaagcaggAAATAGTCCCTGTCGaagtgtaaatgtaaaatgaccAGGCAAGGCATCGGTCATAACTTGGCCAGCTTTCTATGAATGCTTTTCGTCCATAATTGAGAGGAATTATTCAAAACATGtcaattatatttaaaatgtgtatggAAACTGTCCTGTTGGAGTTCATCTGACTCCACCTGCTTTTGGCACACTGACACAGAGAGTTGTTTCAAAAACGCACCCTCACTTGGCACTGCTGGAATGGCTATTTAAGACAAAAtataacccccccccaaaaaaataaaaaaataatatcaacTGTTAAGCCCCCCACATTCATGGCATCATCAGTTTTGTGTAGGAATCCACCTGCTCAAAACATGAATTCAAAACTTTCCATTCGTAGTGTTGAATTTCTTTTAACCCCGACACCAAAATAATAAAGTCAAACGTTATTCAGAATTATGAAAACCACCGTTAGTATCACGATTatgcgttaaaaaaaaaaagaaagaaggtgGAATGCACAGATGATTTTGGAAGTGTTCGGAGCTTGGTCCTGATATGTTTGTTGACCAGAAGCCTCTGCGTCCCGGCAGCAGAGGAGCAGTCGAGGTGGTCGGAGGTCGGAGCGTCCGGTCCTGACCTCCGAGTGGTTGGTTTGTTCTCTCGTGCAAAGACAGAAGGTGAGCGGCGAGTCGTGGTGTTTACTTTGTGCTTCCAGCTTTTAGTGTtggtgtgtatgttgtgtgatTTGAGTGCTtcttcacctctctctctgtctctctctgtctctccctgtctctctccctgtctctctccctctctctctccctctctctctctctctctctctctctctccaaccgTCCGTCTGTCGAGTCGGCTGACTGAGAGTTAAAGTCCTGAGCTGAGGGTCCGTTCACCTCCCCACCGGGGGGGCAGGAGGAGCTCCTCTCATCACGCCtaaaagggagggaggagaaacgAGATGGAGGGTCACTACagggagcacacacacagagacacacagacagagagagagagagacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3700 lncRNA upstream 20835 8289896 ~ 8439252 (+) True G2646
TU3659 lncRNA upstream 162137 8288596 ~ 8297950 (+) False G2614
TU3684 lncRNA upstream 171120 8251279 ~ 8288967 (+) True G2631
TU3677 lncRNA upstream 206988 8251948 ~ 8253099 (+) False G2628
TU3667 lncRNA upstream 209517 8249512 ~ 8250570 (+) True G2620
TU3748 lncRNA downstream 3413 8467061 ~ 8495618 (+) True G2687
TU3730 lncRNA downstream 6906 8470554 ~ 8509264 (+) True G2670
TU3752 lncRNA downstream 11249 8474897 ~ 8477720 (+) True G2689
TU3756 lncRNA downstream 22094 8485742 ~ 8512923 (+) True G2692
TU3726 lncRNA downstream 22470 8486118 ~ 8520808 (+) True G2666
XM_039811024.1 mRNA upstream 45011 8401715 ~ 8415076 (+) True LOC120565323
XM_039800189.1 mRNA upstream 79387 8372857 ~ 8380700 (+) True LOC120558872
XM_039800295.1 mRNA upstream 245046 8211071 ~ 8215041 (+) True LOC120558930
XM_039800252.1 mRNA upstream 344893 8109343 ~ 8115194 (+) True LOC120558905
XM_039804272.1 mRNA upstream 395587 8052523 ~ 8064500 (+) False ccsapa
XM_039803257.1 mRNA downstream 99400 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 153735 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA downstream 153735 8617383 ~ 8643702 (+) False socs7
XM_039816364.1 mRNA downstream 153735 8617383 ~ 8643702 (+) False socs7
XM_039801581.1 mRNA downstream 184411 8648059 ~ 8669290 (+) False sp2
TU3639 other upstream 49152 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 368582 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 511834 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 760547 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1246531 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 427800 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1008452 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1028661 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1307927 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1462023 9925671 ~ 10136159 (+) True G3117

Expression Profile