RNA id: XM_039801581.1


Basic Information

Item Value
RNA id XM_039801581.1
length 6318
RNA type mRNA
GC content 0.45
exon number 8
gene id sp2
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8648059 ~ 8669290 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAACGCGCGCGTCGTTCAACTCTCCATTGTCCGTGGATTGGTGCAGCAGCGCGGGCGGATTCCTCCACCGGGGCTCGGTCTTCAAGGCTCACGGAGAGCGAATGTCGTCATGAGCGAACAACAGGACAGTATGGCCACCACTGTTGCTGTCAGTCCCAGTGAATACCTTCAGCCCTCCACCGCTTCCACACAAGACACCCAGCCCTCTCCTCTGGCCCTCCTGGCTGCCACCTGTAGTAAAATCGGCCCCCCCGCTGCTCAGGCTCCTGTCACCTCTCCTCCAGCGCAGCCGCAGCCTCGCAGGCTCCTCCCCATAAAGCCGGCTCCAATCGCCCCCGCTCCGCCCAAAaacctctctttcctctcagcCAAGGGCAATGTGATCCAGCTGCCTGCCGGCCTGGGCACCACGGCCTCTGGCAACCCCATCGTGCTCACTATCCAGCAGAGCCCGGCCCGCACACACACCTCGGCCCCCGCCAACATCCAGTACCAGATGGTGCCGCAGATCCAGGGTGCCCAGACTATCCAGGTGATGCCACAGGGAGGGCAGTTCCAGCTCATACCAGGGACCAACCAGGCCATCCTCACCACCCCCATGACCGTACCGGCTCCGGCGGCCGCCACCACTCCTATTACGCCGCAGAAGACTCTAGCCATCAAGCCCTGCCCCAAGTCGCGCAAGCCAAACAACTCTGCTGCAAACATGGTGCAGCTGCCGAGCGGGCTCACGCTGCCGCTCAACGTGGCGACCGGAGAGGTTGGCGGGACTCAGTTCATCACAGAGACGGCAGCTGCCCCTCCCACTCCGGGAAAGGGACGACgagggaggaagaagaaagtggctttgactggcacgcctcctcctcccccccaggCTGCCTCTCCACCCCCAGAGCAGATGGAGACCATCTTGATAGAAGCTGGCGACAACATCATTCAGGCAGGCAACAACCTGCTGATCGTGCAGAGTCCCGGGCAGCCACCAATGGTGCAGCAAGTCCAGCTGGTCCAGTCCAAGCCGGAGTCTCAGGTGGTTCAGATCCCCCAGCAGGCCTTGAAGGTGGTGCAGGCCGCCTCCGCTACATTACCGACCATCCCACAGAGACAGTCGGTCCCCTCAAACCTCCAGGTTACTCAAACAGATGCAACACCAACACAGTTCCTCTTCAAAACCGCATCGGGTGAGTGGCAGACTGTTCAGCTACAGGACTCAGTCTCCACGACAACGACCCCCACCACTTCGGTCGTCACCACCAGCACCTCGCCGCCGGCGGGCGCCAAGAAGACGCTGGGGGGAGGACGGAAGGAACGGACTCTGGCAAAAATAGCTCCGGCGGGGGGGATGATCGCGCTGAACCCGTCGCAGCTCTCCTCAGCGACCCAGACGGTGCAGACCATCAGCATCAACGGCGTCCAAGTTCAGGGAGTTCCTGTCACCATCACCAACGCCGGGGGCCAGCAGCACCTCACGGTGCAGGCGATGCAGGGCGGAGGACTCCAGCTGGCAACGACGCAGGGCCAGCCGGCCATCCAGGTGGACCAGACCCTCACCCTGGAGCTGCCCGGCCAGCCAGGAGAAAAGAAGCGGCGCATGGCCTGCACCTGCCCCAACTGCAAAGACGCAGACAAGAGGCCTGGGGAGGTGGGGAAGAGAAAGCACATCTGCCACGTCCCCGGCTGCGAGAAGACGTTCAGGAAAACGTCGCTGCTCAGAGCTCACGTCCGGCTGCACACTGGCGAAAGGCCCTTCGTCTGCAACTGGGTTTTCTGCGGGAAACGTTTCACGCGCAGCGACGAGCTGCAGCGGCACGCCAGGACGCACACAGGAGACAAGCGCTTTGAGTGCAGCCAGTGTCAGAAGCGCTTCATGAGGAGTGACCACCTGACGAAGCATTACAAGACTCACATAAACACCAAGAACCTGTGAGCTGCCTGTATACTGACTCAAACTAAAGACTGTATAAGAGGAAGGAGGGGCAAACAGAGGAGACGATACCAAGGGAGTGTCTGTGACTTATCCCGTTATGGGAAATACTCCAAAAAAGTCCCCATATCCCATCACACTCCTCTAGGACACTGTGTGTACAAAGAAATCCTTCCTGGTGGACTTCATACTGATCCTGCAAACCTATCCATTAATAGTTTAACTTCGTTTTAGTATTTTCTCTGCTCTGAGTTGAGCGGAGGCCAGATCCAGCTCTGACAACTCCGAACACGCAAGATGACGAGATGGCAAGGCTTCAGATGCTTAACTCTGCTTGGTTATTTATGAACTTCCCTTGGGGGAAGAACGTACACAGAATTATTCagacgccaacacaaagaccaCAGGACTCCAGTCACAGTTTCCctctcttttattttgttttttcttccccCAAAtcctgcttgtttttttttgttttttttatctttgtcaGGGAACATTGGGAGCTCCTGGAAATTGGCTTTCAAGcatcaaaaaagaaagagaaaaaaaaaagcattacctTTGTTTTGTAAATTAACAGGTTTTACCTCAGTGGaatgttaattttattttaaggtaTTTGTGGTTAAGCAGGAGTCTCTCCCTAAAAGTTGGGGACGattacgtaaaaaaaaaaacttttagaaGTTTACATTGGctattttttaaagtgtgtatATGCATACTATTATACATCATATTCATAATGATAATAAACTATTTATAACATTTTCCATAAAATTGTTAGAAATTGATTTACAAAGTAGGTATGTAGAAAAACTTgacctaaaaaaagaaatgaaacagGAGGCTTAAAGGCTCAATGagtaggatttaaaaaaaaacaacatgtagACTAAAATAATCCCATTCAGCCATCACTTACAGTATGACCTACTAGAAgtgtgttgtggttgtttttttttaacctgcccTCTGCCTGAATTTTCTTATTTTGCTGTGTTCAGGACGTTTCTGGGCATCAACCTCTAAAATCAGGCAAGGTGCAAGATTGTAAGCACACATCCAAGAGAAAGCTACGAAAATGTTAGACACAGTGCCGAAAAAAACGCAGATTTAGCAAGAGGAAACAGAAAGCGGACAAAGCTTGACTCATCTGCTTGAGCCGGGGATACATTTTAGCTGTTGAGTTTACAAACTGCAACGACAAATCCTACTTATTCTGCCTTTGAAGTTTCACAGCAGAAATACATACAAAGAGGGAAAAGAACATTTTATCACATTTGCTTTGAGGGTACTGATTTCAGTCTGAGCTCTTCCAGCAGAGCGATCCAAGGCCTGGCATCTCTGGTGGCAAAGCTTTAGATGCAGTCACTTTGCTGCCAAGACCACTGAACAAAGCAGCAGCACCTCAGGCTTGGAAGGGGTTTAACATACAGTTCAGGGGCCAGAAGTCACTGTGCCTTAACAGTTTTAATTCAAATCTTAAAAATCTAGTTCTAAACAAACAGGCAAAAAGTGAAGAGCTGCTGAGATTCGATTAGTATAGTGATATCTTAGTGAAGAGCCTGACTCCTGCTGGAAAATATACAAACGGTGGTTTAAACGCGAAAACATGAAGGACAGATTTCAAGGTCAGCAAATGTTACAaaagatgtatttttttaaatagtttgtttTAAACTGAGAGAAGCAAAACAACATCAAAATTTTATCCAATTTCACTCTCGAACCTGGTAAAGCTTAGCAAAGTTTCAAATATTGTCTTGTGTGTTGGTTGATGGAGCATATTCGAGActgttttttaatcattaaacATTAAGGGAATGTATACATCCTGAGGCTTTTGATGGCAACTCAAGTCTCACATCAtgattaggtataatgtcacaAAGTGCAAGCATGTAATTAGAGAATAATAGAGGACCCAGGGTTGATCCTTGTGGAACACCAGATATGATCACCGGACTTTTGTGATCAAGCAGTGTGTTGTAATCAACCATATCAAAGGCTGCGAATGGGTCAAGGTGAAGCAGGATGTCCCCTCTTGTCAGCTGCAAAGAGGACGTTGTTTGTAACATCTATTTGGAGGACTGACATTCTTCAGAAATGTTAATTTTATGACGCGGAGGAAACGCCGTTAAGTTaccaaacattttcttttgagGATTGATAGTTAAGTCTCCTTTTATCAACAAGTCATAATTGATAGATGCAACATTTGTGGAGGACTGCATTACTAACCTGTTGTCCAATAACCTGACTAAGTCCAAGGAGAGTGATGACTTCACATATGAATCCATGTATACTACCTAAAATGCTCTACCTTTTTAGAGAATTACTGCAAAAACATTCAACTTTCTGGTGAACTTCGTTTTCTGTGACGACAGGGCAAAGTTGATAACCGTCAAACAAAtccaagagtttttttttaagtttgaaaAATAAGGTAAAAAAAGGTCTCTTGAGTCTCCAGGTGCTAAGGATTTAATTCAGTGAAATAATTAATGTGATGAACCCGCTCACACCCCTCTTTTCCCTCTGAGGTCAAAATCAGGTTGCTTCATAGTTGGTTATCCATCTAGGATACCACAACAGGTACGCTTAcgtctagggctgggtatcgaacTTCGATACTTTCAGTACTGGAATGTGTTGTTAGCACTGAGTATGGAAGCTGTCAAAAAAATAAGAGTTGGCATTGAATATTTGGCCACATTCATACTCTATGGACTTGTTCCTTTATCACAGTTCCTGATTTAAATCATACTCTTTTAGACAGCATTCTGTTTAGTTCTTGAATGGCTGCATGTGTTTAGACATTTGATTTTAACAACTTATCTCCTTTTATTACCTGAAAGGTTTGCCTTTTCATTATGGCgtatattttagaaaaaaatgtttgtacTTCTCAAAGTAAGGTATAAAAAAAgtatgatacccagccctacttacaCTGTGTGTACTAATAAATAAGTAACTAAATTCCAGGGTAACTCTGCGAATCTGCTTTACTCACAGTATCATTTGGATTTCATGATTTGTAGCCTATGCATTGCTGTATTAATATGAACAGATTTCCAATTATTTGGCCTGACTTGACAATCACGTCCCAAGATGAAAAAATATCTTTCTCAGGCCTTCCAACAGTTACTTTGTacatgcattttctttttccagcTATGTGATAGCTTTAATTCTGAATTAAcacttgagttttttttatatgcagaTGACCAGCATAAGGCCTACTGTACAGTATTCACACAAGTTGCTTAAATGTATTTTGCTTTACAGAAAACATTGTTGctcatgtgtttttgttgttgttgatataATGAAGATTTACTGACGTTTCGCTAACATCTCATCAGTCAGTTTAAAGTCTGAACTTGTACGTGAGttacttttatttaaagaaatacaccGACTTATTGTTAAATAAGCTTTTTGGTCAAATTAGCTTGGTGCTTCACCTCTGTGTTGAGTTTTCACTGTGGCGTGTTTTCAATACTGTGACATACATGTTAAATGGATGGTGCTGCCTTGCTAAATATTACAACTTTGACCAAAAAGTTAAAAGTCTGATTTGTTTTGTATAGCACTTTGAATTCTCAAAGTGATTCACAGGGGCGGCAGAGAAACGTAAAGCTTACATGTAGGTGGCCAATATTTGGTGTATTTTTTCTAGAATATGTCTGAAGACATGCGATGCCATGGGGATGGAAAGACAGAGCCGGTTcatatttatgtttgtatttcATGTCTGAATATGTAAATACAGTGTGTGTCTGGGAGACACAATAAATGTAGGATAATAAAACCCAAAAGTTAAGCTGCCTAGTGTTGTTGTTGGCGTTGCCAGCCCTGAAGGAAATGGACTTTGTACAGTGTGTAAGGAATAAAATATAATGTGACATTGTATAGCTTCATTCCTGCTTTGTATACGACTTCTAAATCTTTTTTCTATTGAATTAAAGATGCCTTAGACAGCTGCACCCAGTATttagagatgttttttttctgtctaatTCCAGGTAACATTTGTAAAActccttttgtgtttttaacttATGTTACATGCTCATGTAATGTGCACTGATTTAAAATCCCAGGTTCCAAAATTTGTAAAGTTGATCTTCATTGTAATGATAATGAGATTTTCCAAATTTAGACGTTTCTTTTGCTTGGTTTCGGTGAAATAAATGCTTCTCCTTCTTCAGGCCTATATGTCATATAATGTTCAGCAGCCAATTGTTGTGTTTATATGGAGAACCCGTAGAACCAGCAACCCATTTTATAAACTGTGTAAAGGTGCTAAAACATAATGTTGGCTCCTTTTCTacagccccccctcccccccaataAAGAACTTAAACCATT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3779 lncRNA upstream 2943 8644435 ~ 8645116 (+) True G2714
TU3793 lncRNA upstream 4916 8640061 ~ 8643143 (+) False socs7
TU3780 lncRNA upstream 53073 8594722 ~ 8594986 (+) True G2715
TU3768 lncRNA upstream 105462 8535766 ~ 8542597 (+) True G2704
TU3726 lncRNA upstream 127251 8486118 ~ 8520808 (+) True G2666
TU4083 lncRNA downstream 25430 8694720 ~ 8701856 (+) False abcc10
TU4084 lncRNA downstream 25430 8694720 ~ 8702455 (+) False abcc10
TU4085 lncRNA downstream 25430 8694720 ~ 8701905 (+) False abcc10
TU4106 lncRNA downstream 50950 8720240 ~ 8720660 (+) True G2909
TU4155 lncRNA downstream 106732 8776022 ~ 8780526 (+) True G2942
XM_039816351.1 mRNA upstream 4357 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA upstream 4357 8617383 ~ 8643702 (+) False socs7
XM_039816364.1 mRNA upstream 4357 8617383 ~ 8643702 (+) False socs7
XM_039803257.1 mRNA upstream 72732 8563048 ~ 8575327 (+) True mrpl45
XM_039811024.1 mRNA upstream 232983 8401715 ~ 8415076 (+) True LOC120565323
XM_039808749.1 mRNA downstream 881 8670171 ~ 8694202 (+) False abcc10
XM_039808730.1 mRNA downstream 881 8670171 ~ 8694202 (+) False abcc10
XM_039808757.1 mRNA downstream 884 8670174 ~ 8700617 (+) True abcc10
XM_039808740.1 mRNA downstream 884 8670174 ~ 8694202 (+) False abcc10
XM_039811057.1 mRNA downstream 35577 8704867 ~ 8714096 (+) True si:ch211-69b7.6
TU3639 other upstream 237124 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 556554 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 699806 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 948519 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1434503 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 222158 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 802810 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 823019 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1102285 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1256381 9925671 ~ 10136159 (+) True G3117

Expression Profile