RNA id: XM_039808749.1


Basic Information

Item Value
RNA id XM_039808749.1
length 4507
RNA type mRNA
GC content 0.58
exon number 20
gene id abcc10
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8670171 ~ 8702455 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gTGGCGTGCGTCATCAGGAATCGACAAAAGTATTTCCTGCTAGCTAGATGAAAGCCGGTTCCCATTTTTCTGCGACACGAGTGGTTAAACCGAAACACATTTATGATGAGAAACTATCAACAAATGTGAGTGAAATATTTTCTAGAATGACGGCAGTCAAGTAAGAGGAGGAATGAGAGTCTTTGGACCAGCAGAGCTGGTCGCAGGCCTCTGTCATGCAGACGAGCAGAATCCTTTCCCCGTGTGGCAGGATGGACACGTCAGCCCCTGTTTCAACCAACTGGTCCTCGGAGTCCTGCCTCATGCAGGGTTGGCTATTTTCAGTGCCTGCTACATCAGCATGTCAAGGTGCGACCTCCTCCGGTCGTCTCCTCCCTGTGGTTGGACACTCCGGTGGGTGTCGGCTCTGCTGGCGGCGCTGCTCTTCACCGCAGATGTCGTCCTGGCGAGCCTCCTCCAGCGGACGGACTTGTACCTGGACGTCCTAGCTGACGGCAGTGCCATCCTGGCCTGGCTGGTCCACTTCGGTGCCATCACGGTGCTCCAGAGGACCGCTTTCAGGAGAACCAGAGgacctcctctgctgctgctgctggttctCCTGTCTGTCCCAAACCTGGTCGTCACCTTGACGATTTACTGCGACAATCAGGAATATTTGAACCTCACAGAACCTCTTCAACTGGCTCGTTTTGTGCTTGCCTCAGCCCGCACGCTCCCCCTTCTGGTTTACATTCTGGCATTTGCATTTCCCTGCATCACTGATGCCGGATACACTCTGTATATCAACGCCGTGGATGGATCCCCGCTCGTCCCAGAGCGCGCCCATCCGGACACGGGTGAGATGGTGGCCGAGGACGGGAGCGGTGGCATCTCTCGGCTCTTCTACCTGTGGTTGGACCCTCTCCTCAGACGGGGGCAGCGAGGCGAGCTGGACAGGCCAGCTGATGTTTACCACCTCCCTCGGAAACTACGGACTACTGTGGTTTGTCGGTACTTCCACCAGTGCTGGGAAGCCTGCCGACGCGGGGCAGCGGTCCGTAACGGACAGGATCCGTGGCCCAGGCCGGTCAGCAGAAACCTCCTGAGCGGCAGCTGGAGTTACCAGGAGGAACCGCTGGAGCTGGAGGGGGATGTAGGACTGCTCAGGGTGCTGCACAAGGCGTTTGGGTTGCGTTACTACATCCTCGGTGTGCTGAAGGTGACGGTCAACATGCTGAGCTTCGCAGGGCCCCTGCTCCTCAGCAGTCTGTTAAACTTCATGGAGGACAGGGAAGCTCCTGTGAGCTGGGGGGCCTGGTGCGCTCTGGGGCTCTTTGCCACCACCcttctctcttccttcttcCAAAACATCTTCGTCTTCGAGGTCTCCAAGGTGGCGCTGTCGGCGCGCGCCGCTCTCGTGTCGGCCATTTACGGCAAAGCCCTGCAGGTCAGCGGCAGCAGCCTGGCCGGCACCACGATGGGAGAGGTGGTGAACCTAATGAGCACGGACACCGACCGCGTGGTCAACTTCTGCAGCAGTTTCCACGAGCTGTGGAGCCTTCCCTTCCGGTTTGTTATCACCCTCTATCTGCTGTACCTGCAGGTGGGCGTGGCTTTCCTCGGAGGGCTGGCCGTGGCTCTGCTGCTGGTGCCTTTCAACAAGTTCCTCGCTACCCGTATCCTTAGCAACAACCAACACATGCTCAGGCACAAGGACAGCCGCGTTAAGTTAATGACCGAGATCCTCTTTGGCATTCGCATCATCAAGTTCTACAACTGGGAGCCTCATTTTACGCAGAAGGTCTCCGACTGTCGTAAACAAGAGCTGTCCCACCTCAAAGCCCTCAAGTACCTGGACGCCATGTGTGTTTACACCTGGGCTGCTCTGCCCGTGGTCATCTCCATCCTCAACTTCGTCACGTACGTGCTGCTGGGAAACCAGCTGACTGCAGCCAAGGTGTTCACCACGCTGGCTCTGGTGGGAATGTTGATCATCCCACTCAACTCGTTCCCCTGGGTGCTCAACGGCATCCTGGAGGCCAAAGTGTCTCTGGATCGAATCCAGCGCTTCTTCAAACTGACCAACCAGGATCTGCAGGCGCACTACGCCCTGGTGTCTCCTGAGGACAGTCAGACGTCGATCCTGTTGAGCCAGGGGACATTTTCCTGGCAGGGGCCCGACGGTCCCAACcagaagaaagagggagaaactAAAACTGGAGCCGCTGAAGGGAGCCTGCTGCTGCACGGTCTCACTCTCCACATCACCAAGGGCTCTCTGGTTGTGGTGGTGGGGAAGGTCGGCTGTGGGAAGAGTTCCCTTCTGGCTGCTCTCACTGGAGAACTCAACAGGCTGAGTGGAGTGGTGTATGTCGCAGACAGAGAGGCCGGCTTCGGTCTGGCGTCTCAGGAGCCGTGGATCCAGAATGCCTCAGTACGGGACAACATCCTGTTTGGCAAAGACTACGATCCCGTCTTCTACCAGGCTGTGATACAGGCCTGCGCTCTCTCAGACGACCTCAACGTTTTGCCAAATGGTGACAAGACGGAAGTGGGAGAGAACGGAGTGACCCTGAGCGGAGGACAGAAGGCTCGAGTAGTCCTCGCCAGAGCTGTTTACATGGACAAAGACATCTACCTCCTCGATGATCCGCTGGCAGCGGTTGACACCGACGTGGCCGAACACCTCATGAAGAGGTGCATCATGGAGCTCCTCAGGGGGAAGACCAGAATCCTTTGCACACACCGCATAGAGTTTGTCGACAAGGCCGACATGGTCGTCCTAATGGACAATGGAACCATCGTCAAAACAGGCACACCAGCAGAAATCCTTCCTTTGGTCGAGGCCATGCCGAAGAAACGGAAGAATGACCACAACATGAAAGAGAAAGATGGtgtggagcaggaggaggaggagccggGTTTATCTCCTGATCTGTGTGTGGATGATGACCCCAACCTGTCGGGGGCGGAGCAGAAGCAGATGGGCGGGCTGGCGTGGAAAGTTTACCGAACCTACTGGGTTGCTTGTGGCGGAGTGCTGGCCGCCTCCATCCTGATGTCTCTGCTCCTCATGCAAGcCTCTAAGAACATTTCCGACTGGTGGCTGTCTCACTGGATCTCCGCGCTGAAAAACAACGGTACCACAACAACAAATGTTTCTTCCTCTGCTGCCTTCAGCTCACCtcacctgcttctcttctcaCCTGGAGGGTTAATGTCTCCTCTGTCCTCACTGCAAACGTTCACTCCAAGCAACATGAGTTCAGATGTCAAGTTTTACCTGACGGTGTACGCCTCCATCGCCACGGCCAACACCGTCTTCACCGCCCTCCGAGCTTTCCTGTTTGCCTACGGAGCCATCTGCGCCGCCACAGCCATCCACAACAGACTTCTGGACCGGGTCCTAAAGGCCACAGTGTGCTTCTTCGACACCACCCCGATGGGTCGCATTCTCAACCGTTTTTCTTCGGATCTGTACACTGTGGACGACAGCCTGCCGTTCATCCTGAACATCCTGCTGGCCAATGTTTTCAGTCTGCTGGGCATGCTGGTGGTGATAAGCTACGGCCTCCCTTGGGTCCTCGTGCTTTTTCTGCCCCTGGCTCTTGTCTACCACCGCACGCAGCACTTCTACCGACACACCTCCCGGGAGCTGAAGCGCCTGTGCAGCATCACTCTGTCGCCCGTCTACTCGCACTTCTCTGAGACGCTGACTGGGCTGGGAACCATCCGGGCCAGCGGCAGCACTGCCAGGTTTGAGGAGGAGATCGCCAAGCGTCTGGAGCAGAACCAACGCTGCCTGTTCCTTAGCAACGCCACCACGCAGTGGCTGAGCATCCGCCTGCAAATGATTGGTGTTGCTGTGGTGACCGGCCTTGGGGTGATCGCAGTTGTCCAGCACCAGTATAATTCTGTCGATCCAGGTCTGGTGGGTCTGTCCCTGTCCTACGCCCTGTCCATCACAAACCTGCTGTGTGGCCTCATATTCAGCTTCACCCAGACTGAGATGCAGCTGGTGAGCGTGGAGAGGACTGAGGAGTACTCCACCAGCCTTCCCACCGAGCCACAGCACCAGAACACACAGCTGTCCCCGGCGTGGCCCGAGCAGGGCTGGTTGGAGTTCCGCGGCGTGGTTTTGGTCTACAGGGACGGTCTTCCTAACGCCCTGGACGGGGTGAGCTTGGTAGTGCGACCCGGGGAGAAGGTGGGCATTGTGGGACGCACGGGCTCCGGAAAGTCCACCCTGTTCCTGGCTCTGTTCCGTATGGTGGAGCTGAACCAGGGTCAGATTCTCCTGGACGGGCTGGACATCAGCTCCGTGGGCCTGTCTCAGCTCAGGTCCAGGTTGGCCATTATTCCTCAGGACCCCTTCCTGTTCAGCGGGACCGTCAGGGAGAATCTGGACCCGTGTGGGCGACACTCAGACCAGCAGCTGCTGGACGTCGTGGACCAGTGCCACCTCAGCTCTGTGGTCGACCGGATGGGTGAGAGCCTCGAGATTTAGGGGGTGAAAACATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3779 lncRNA upstream 25055 8644435 ~ 8645116 (+) True G2714
TU3793 lncRNA upstream 27028 8640061 ~ 8643143 (+) False socs7
TU3780 lncRNA upstream 75185 8594722 ~ 8594986 (+) True G2715
TU3768 lncRNA upstream 127574 8535766 ~ 8542597 (+) True G2704
TU3726 lncRNA upstream 149363 8486118 ~ 8520808 (+) True G2666
TU4083 lncRNA downstream 518 8694720 ~ 8701856 (+) False abcc10
TU4084 lncRNA downstream 518 8694720 ~ 8702455 (+) False abcc10
TU4085 lncRNA downstream 518 8694720 ~ 8701905 (+) False abcc10
TU4106 lncRNA downstream 26038 8720240 ~ 8720660 (+) True G2909
TU4155 lncRNA downstream 81820 8776022 ~ 8780526 (+) True G2942
XM_039801581.1 mRNA upstream 881 8648059 ~ 8669290 (+) False sp2
XM_039801588.1 mRNA upstream 881 8648124 ~ 8669290 (+) True sp2
XM_039816351.1 mRNA upstream 26469 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA upstream 26469 8617383 ~ 8643702 (+) False socs7
XM_039816364.1 mRNA upstream 26469 8617383 ~ 8643702 (+) False socs7
XM_039811057.1 mRNA downstream 10665 8704867 ~ 8714096 (+) True si:ch211-69b7.6
XM_039811785.1 mRNA downstream 26530 8720732 ~ 8732510 (+) True mrpl4
XM_039776631.1 mRNA downstream 51730 8745932 ~ 8774048 (+) True col9a1a
XM_039790180.1 mRNA downstream 98843 8793045 ~ 8798927 (+) True lgsn
XM_039794452.1 mRNA downstream 171457 8865659 ~ 8889555 (+) True LOC120555608
TU3639 other upstream 259236 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 578666 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 721918 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 970631 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1456615 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 197246 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 777898 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 798107 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1077373 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1231469 9925671 ~ 10136159 (+) True G3117

Expression Profile