RNA id: TU4155


Basic Information

Item Value
RNA id TU4155
length 3109
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G2942
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8776022 ~ 8780526 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgttgtttttcagtGTATCATTTAATGTACTCTCACAAGTTGGTGAACAGGTACAACTTTGTCGCTCACGGTACTAAATCACACATCCATTGATAGTATAAATAGCcaacctaataataataataatagtacaCATTTTCAAATACATAAAATCATCAAGTATCCAAGTCTTAAGTTACAGACATCAAATAAAAAGGCATACAAAATATCGCAGACGTTGGAAGTCCAGTTTGAAgcaaaaaataaacttaaaaataaaaaataaaaatcacattttggACATGGCAGTTAATTAGTAAACAGAAGGTTtaatagagaaaataaaaaaagtacgAGTTCCCAGACTTTCAATTGACAAATATTGCAACAATGAagcattttatattaaaaaattgtTACTGAAAGGGCTTATGTGAGTGTAAGACTTCCTGCACAAGACAAAGGCAacgatttttttgttgttccgAGTAGAAAAATGAAACACCTTTTCCAAATGGCAGCGGGGGGGGTCGACCCCCCGCCTCCATTGCCTTTGTTCCACTTCGATTGTAAGGCATTTATGGATGAACCATCTGATCTGAAGGAAGGCGTACCTCTTTCTAGTCAGTCTTGAAACGGAACAGTAAAATTGAACGGGGTACATAATTTGCTCACgtgaaattaaaaatgtttgttttgagaACATTCTCAGGCGATGTTAACGCACTTGCCAATCCAAAATCTTTGGGCTTTTTGCAGAAAAAACAATTAATCCAACATCTTACAATGATACACGACTCAGCGCTGCCCTTcctaacgttttttttttttttttttttttttccttcatctCGGGCACATGAAGAGAAAACACGGTGATCCCGGTTCACACaactcatttttcttttctttttttgtttgacaCTTGATATTGAACCTTGAAAGGGAAGAGGGCAGTTTAATTACCGAGCATGGTTTTCCAAAGTAAAGAACTTCAACACAACGACTTAGAAAACAAGCCTGCCAGGTAATAAGCTAGCGAGTTTGGATTGAATGGGGCGGGCTTGGCTCAGGGCTTGGCTCTACTGGATGCAGCAGTTATTGCGATGGCCGTTGGAATCTTTGAAGCGCAGGCGCATCTTAGGACGATATTTCTCCAGGTAGAACAGCTGTTTGCTGTTGAACGCTCCTCGACGCTTCCTGGAAGAAACAACGGGACACTCATTCAGCTCAGGTCGACAGATGACATCACAAGATCATTTAGTATCTCTGTAGCACTGTGAGAAGATCCttgattaaaatgtaatttgccccccccccccaccccccaccccccaactgTTAAATGTACAGCTCAGTACACGTCCTGGTCacaataactttttttcaaattgaatttaagaaatgtttgtgcgtttatgttaaaaaacaaaagaattttGGGGCAAAGTCCACGGTTGGATTGCAGCAAAAGACTTGTGTCTATTTGTTTTCTGTCTACCTCTAAACTGCCATATCTAGGGAGGTGGAAGTTTCCCAAAAACAATCttataaacaatataatatttcttgtcttttattCTTTTAAGACTGGTCTTTTCTACGCTGTACAGGATTTTATACATCaaatagttttttatttgttgtttaaatAACCTGATGTTTTTTATAGGGGTGTTCagaaaaatcgattcacattcgaATTGCGATTCAaactctaccgattcaaaatcgattcatactttttacatttttttaactcttatgtctactgcaatcacatgggaaaagtaactacatttacatactgtgaatcgttttttgaatcgagaatcgtttttgaattgaaaataGATATTGAATCgggacattttctgaatcgtgcaccccctAGTTTTTTTAATGACTGACTGGCTtgttttgtgaagcactttgtaacatggagtttgaaatgtgctctataaataaagatgatatattataaataaatacaaagagtATTCGCAGGTATATCCTCTGCCGGTATCAGCATTTTTGAATCATTCTGGTCAAAGCTTTTCACAGTCACGTGTCCCACTTACTgtcgaatgaactggacagcATCTTCATATTTCATCCCACATTCAATCAAGGCGAGCGCGACCAGAACAGGAGCTCTGCAGGGAAGGAAAAAGGAAGTAAGgaaataacttgcattttatttacattgCCCTGTTCATTTGAAACTACTGTTTCAGTGCTACTGTCTGGTTTCATCTATTATCAGAGAGACAGTTCAATCTGAGACCAAAAACTTCAATCGGCAAAGTTTTAAAACCTTCATATTTGTGATTAAAAGCCTGTATATAAAACCGAGCCGTATGTTTAAGAGGAGTTCAGGGAGTGGATATTATTCAGCCATTTCTGAACCTAAAGGTCAGTTGAAAGCCGACGGGATGAAAACAGAACCTGTTTGGCAGGTTGTCTAAACTAAGCAAACACACGGGACACAAAGCGACTGAGTTCACGTACGGCAACATACAAGAAAATCTACTCGACGGCTGTTTGGTTTCacatttttttggtttgtttttcaagCCACGATAGATGACACACtttgtttttcataattttGAAACTCTGACTCAACAAGATATCACTGAATGAAGCAATCTACCAACTTCTTATCTAATCTTCACCATCTAATTTTACATGTCCTTAAAATGACATTTGTGTAAAAGTAATGGCTTCTAATAACTGCATGAAacaggctgagagagagagagagagagagagagagagagagagagagagagagagagagagagaaccctCTAACGCTGGGTTTTACCGGCAGCTTTGTACAATTGCAACTCCGCTGGCGCTCAAACTCAGAGTCAACTTTGGTGAACGGACGGGGGCTCTTCTGTGGTAATTTAGAGccagatgtattataagaccaaccaGGTCAGATTCCGTCTACTGTGCTGCTGCCCTGCACTGGTGACCGATATTGCGAGACAAGTTTTACCTCGACGAGAAGTCTCGTCACATTTTAATctcgagatctcgtcacacctctatTATTTATGTATATCACCACGGTGCATATGTACATTACTCTGTGCTTTACCGCTTTTTTGCATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4106 lncRNA upstream 55362 8720240 ~ 8720660 (+) True G2909
TU4084 lncRNA upstream 73567 8694720 ~ 8702455 (+) False abcc10
TU4085 lncRNA upstream 74117 8694720 ~ 8701905 (+) False abcc10
TU4083 lncRNA upstream 74166 8694720 ~ 8701856 (+) False abcc10
TU3779 lncRNA upstream 130906 8644435 ~ 8645116 (+) True G2714
TU4159 lncRNA downstream 18839 8799365 ~ 8800271 (+) True G2946
TU4160 lncRNA downstream 19941 8800467 ~ 8800749 (+) True G2947
TU4186 lncRNA downstream 126113 8906639 ~ 8909986 (+) False zbtb45
TU4194 lncRNA downstream 142641 8923167 ~ 8923474 (+) True G2980
TU4200 lncRNA downstream 161353 8941879 ~ 8942122 (+) True G2986
XM_039776631.1 mRNA upstream 1974 8745932 ~ 8774048 (+) True col9a1a
XM_039811785.1 mRNA upstream 43512 8720732 ~ 8732510 (+) True mrpl4
XM_039811057.1 mRNA upstream 61926 8704867 ~ 8714096 (+) True si:ch211-69b7.6
XM_039808757.1 mRNA upstream 75405 8670174 ~ 8700617 (+) True abcc10
XM_039808749.1 mRNA upstream 81820 8670171 ~ 8694202 (+) False abcc10
XM_039790180.1 mRNA downstream 12519 8793045 ~ 8798927 (+) True lgsn
XM_039794452.1 mRNA downstream 85133 8865659 ~ 8889555 (+) True LOC120555608
XM_039794442.1 mRNA downstream 85585 8866111 ~ 8889555 (+) False LOC120555608
XM_039800068.1 mRNA downstream 110789 8891315 ~ 8911908 (+) False zbtb45
XM_039800066.1 mRNA downstream 110790 8891316 ~ 8907964 (+) True zbtb45
TU3639 other upstream 365087 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 684517 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 827769 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1076482 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1562466 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 110922 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 691574 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 711783 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 991049 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1145145 9925671 ~ 10136159 (+) True G3117

Expression Profile