RNA id: TU4200


Basic Information

Item Value
RNA id TU4200
length 244
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2986
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8941879 ~ 8942122 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgctttttggcttttccccctttcctttattgtgttatatatctttttgtatgcacgttataggtttacaaagtgaaaaagcccaaagtcccccccaaagggacttaccatctccaacagaaaaccctgttcaccaactgctccaaacagctctattgtagtccagcctttacttcagagacagacgtggtcactttggaacacatgttataatgctcgcctagctgctagcagggcacgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4194 lncRNA upstream 18405 8923167 ~ 8923474 (+) True G2980
TU4186 lncRNA upstream 31893 8906639 ~ 8909986 (+) False zbtb45
TU4160 lncRNA upstream 141130 8800467 ~ 8800749 (+) True G2947
TU4159 lncRNA upstream 141608 8799365 ~ 8800271 (+) True G2946
TU4155 lncRNA upstream 161353 8776022 ~ 8780526 (+) True G2942
TU4257 lncRNA downstream 86661 9028783 ~ 9030626 (+) True G3031
TU4269 lncRNA downstream 184061 9126183 ~ 9126699 (+) True G3041
TU4271 lncRNA downstream 194069 9136191 ~ 9136407 (+) True G3043
TU4272 lncRNA downstream 210757 9152879 ~ 9155815 (+) True G3044
TU4273 lncRNA downstream 219065 9161187 ~ 9163911 (+) True G3045
XM_039815502.1 mRNA upstream 4651 8932065 ~ 8937228 (+) True LOC120568168
XM_039800068.1 mRNA upstream 29971 8891315 ~ 8911908 (+) False zbtb45
XM_039800066.1 mRNA upstream 33915 8891316 ~ 8907964 (+) True zbtb45
XM_039794452.1 mRNA upstream 52324 8865659 ~ 8889555 (+) True LOC120555608
XM_039794442.1 mRNA upstream 52324 8866111 ~ 8889555 (+) False LOC120555608
XM_039801002.1 mRNA downstream 75851 9017973 ~ 9027145 (+) False arhgap19
XM_039800994.1 mRNA downstream 75880 9018002 ~ 9027145 (+) False arhgap19
XM_039801009.1 mRNA downstream 75880 9018002 ~ 9027145 (+) False arhgap19
XM_039801019.1 mRNA downstream 76054 9018176 ~ 9027145 (+) True arhgap19
XM_039800816.1 mRNA downstream 95057 9037179 ~ 9113353 (+) False slit1b
TU4189 other upstream 48386 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 530944 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 850374 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 993626 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1242339 7699265 ~ 7699540 (+) True G2530
TU4342 other downstream 529978 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 550187 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 829453 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 983549 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 1181029 10123151 ~ 10124118 (+) False LOC120559251

Expression Profile