RNA id: TU4273


Basic Information

Item Value
RNA id TU4273
length 2725
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G3045
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9161187 ~ 9163911 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTTCTTGAATATGCAGTTAAAAGAAAAAGGTGTCCGTTTCTCAGACAGAGATTTAAGCGTAGTCCTGGACTGTTTGCTGAAAGACAACTTCTGTCAAAGTCTCTGGAGATGTTCGTTGCGGTCTTGCatctattttgtagcttgtttgTGTCTTAAGATTGAGAATTAATTTTGTTAAGCCACAGCAACCTCGATGGACCAGCATGCAATGCAGCCACAATACACTTTCTTATCTTAACTGGGAAATCTTTGTGTCTTGTTTTTAAATCACAGGCAAATGTGGGATTTCAATCTTCAAACTCAAAGCATTTTACCTTTCTGAATATGAATTAAACAACATACCGTGAAAAAGGACATGGCAAAAACTAATTTTTTCAAGATTTTTACATTTCTAAATTCAAATTcttgcattgtttaaaacagTATAATTAAAGTCAAATGTGCTTCTCAGCAGACGGATAAAACACCGCAGGGGTCTTTGTTTTTCGCTCCTTTGGTGGCAGCTCGTACACACAGAGGCCTGTAACGGCATGTGTCACTCCCAACAGCGGCAGAAATAGATGAGGCAGGAAGGAAAAGATAAGAGGAGAAACTTAAACCGCAACAAAAGAACTGCATCTGAATCAAAGACTGGTCACATAGAGAATGGAGGAAAGAAAGATTGGTAGGttgatttaaatacaaaaagaggaagaaaagtgGTTTTCACAGAGGCAGTGCCTGCAGACTCCCAGATCAAAATGAGCCAGCAGGGCTGATGTTCTGCAGGCTGTGAACAAAACACACCCACCTGCTTCTAAATGAGAAACGGCAGCCTCCCTGCTTCATAATTATACATGTAACCCGCCCACACAAAGTGTGGCTACCTGATGAGGAGGGagagtgtgcgtgcgtgtgtatgtgtgtgtgtgtgtgtgtctctacgtGCTCTTCCACGGATGTATGTGCTAGAGAGAATACAGCGTTGTATTCACAGAAACCTGGCTTCTGGCTTTTAAAGAATGTGTCTTTTCTCGTTTTAGAAGAAAACGGAGAGAGGAAACGAAGATGCCATCAGAATAACAACAGTATACGAACGATGACAAGAAACGACAATTATTCCAAAACTGCTTCCGTCAGTTACATCTAAAAATCTGGAAACGAGCCGTACTAAAAATCCTGATTCttctttgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtttctaatgTACAATCAGCTGCTTTGAAGTGGTCGGACCTGAGGTATAAATGACAACCAGATGTGCAGCGGGACATTAACAGAAACAGAAGAAACCTCTCGGCAGAGAGGAGCATGGCAATCGTATACATTGTGGGTCTTTCTTTGCTGGTAGCACGCAGCATCGCATGCCATCCTGAAACCAAATGGCACGCCATGTGGCGTCTACTAAGTGAGGTTACAGTAGTTGCTGTTTgacatgttttttcttttcttctttttttatcacGTTATTGACATTGTCTTTCACtcagaagaaagaaaatcatcaaatcaaataaaaaataaaaaacaaaacctgaAAAGCAAAAGAGAAATCGATTGGCTTACCTGAAGATGCAAAAACAgtcaaataaatacacatatattCATAAGTATATAGTTTTTCCTCATTTTCATTATATAAAGGTAcattttcctgtgtgtgtggtttttttttttggaatgcaGTGTAAAAGATTTTGGATGTATTGATCTTTTACAAGACAGCAGATAAAGGAAGGTTAACTTGCCCACCTGTCCCCCACCCCCAATCTCCCCTCTGGGTCTCTGATTTCACCGGttgtgagaaataaaaaaaattaaaaaaaattaaaaagaaaagaaaatccccCTGTCATGTTTCAACCTGGAGTTATGTTACacctaaaataaaaactaaaaaaaacacaataaagcataaaagaaaagaaaaaataaacccTCAGTTAACAAAAAGACCTGGTTCTTTCTCAGACCAGGGTGGGACCGACTGCCTCGCCTCCAGGGTGAAACCAGATGACCGAATCCCAAAATGTTTTGACTTTTAGGAGGAAGAAATGAGAGGTTCGCAGCCCTCCCATACCAACCCCATCCAGTGCTCAGAACAGGAATAGCTGTAAAGCCCCTGtgggtcttcttttttttcttctctctctcaatctGTTGCTCATTATATACTTCTATAAGGTTTTGTTGTtgcgaaaagaaaaaaaatacctgAAAAGAGGTAGGGTGGCAAATATTGGTCAGTCAGACACTTGAAGcgtctccctcctccctttgcAAGAAGGAGgcgaaacaaagaaaagaaaaacgaacagatgagaaaagaaaaaaagagcggAGGATACTACATTTCCCAGAGTATCAGCTATCCCTTCGCCAGGCTCCCGGGTAAGGTATACGTAAAAGTACGAGGCACAGAAAGGAGTCATTATTCTGAGATTGAGGTATAGCACTTTGTCTCTGCTCTATCGTTTTTTGAAGTTTATACGTGTATAAATTACATCTTGTACAGGTAGTTAAGTCTGCGCCATTTTCCGACTGACAAATATTGCTGCCCATCCCCCACTGGCTCGATCCTGAGACATTTACAGTACTGAAGGCTACTGTCGCACGCCCGCGTCAGAAAACGACTGCGTTTCCAATTGCAAGCAGCGTGAAGTGAAACTAAAagcaaaagaataaaaacaacagtctggtaaaaagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4272 lncRNA upstream 5372 9152879 ~ 9155815 (+) True G3044
TU4271 lncRNA upstream 24780 9136191 ~ 9136407 (+) True G3043
TU4269 lncRNA upstream 34488 9126183 ~ 9126699 (+) True G3041
TU4257 lncRNA upstream 130561 9028783 ~ 9030626 (+) True G3031
TU4200 lncRNA upstream 219065 8941879 ~ 8942122 (+) True G2986
TU4289 lncRNA downstream 16812 9180723 ~ 9181186 (+) True G3057
TU4308 lncRNA downstream 99393 9263304 ~ 9306556 (+) False G3072
TU4311 lncRNA downstream 141036 9304947 ~ 9306556 (+) True G3072
TU4331 lncRNA downstream 243730 9407641 ~ 9496782 (+) True G3085
TU4304 lncRNA downstream 303706 9467617 ~ 9516145 (+) True G3069
XM_039800816.1 mRNA upstream 47834 9037179 ~ 9113353 (+) False slit1b
XM_039800826.1 mRNA upstream 47834 9037452 ~ 9113353 (+) True slit1b
XM_039800994.1 mRNA upstream 134042 9018002 ~ 9027145 (+) False arhgap19
XM_039801224.1 mRNA downstream 86528 9250439 ~ 9279934 (+) False LOC120559502
XM_039801231.1 mRNA downstream 86528 9250439 ~ 9279934 (+) False LOC120559502
XM_039801236.1 mRNA downstream 86528 9250439 ~ 9276651 (+) True LOC120559502
XM_039800864.1 mRNA downstream 174808 9338719 ~ 9366798 (+) True LOC120559260
XM_039800873.1 mRNA downstream 174808 9338719 ~ 9366798 (+) False LOC120559260
TU4189 other upstream 267694 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 750252 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1069682 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1212934 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1461647 7699265 ~ 7699540 (+) True G2530
TU4342 other downstream 308189 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 328398 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 607664 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 761760 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 959240 10123151 ~ 10124118 (+) False LOC120559251

Expression Profile