RNA id: TU4308


Basic Information

Item Value
RNA id TU4308
length 427
lncRNA type sense_over
GC content 0.55
exon number 2
gene id G3072
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9263304 ~ 9306556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cattcacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacagagacacacactcacacacacactcacactcacactcacactcacactctgcCCGTCACCCGTGTCACCTCACAGCCAGCCGTTGGAGGAGAAGTCCCGCCTCAGCTGCTGAGCCTCGGCCTCTGTGAGCGGCTGAAGAGGTGATCGACAGGCGCCGCCGTGGAAACCAAACCACTCCATTGCCTGCTTGAGGGCGGGGACTCCCAACTTCCTGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4289 lncRNA upstream 82118 9180723 ~ 9181186 (+) True G3057
TU4273 lncRNA upstream 99393 9161187 ~ 9163911 (+) True G3045
TU4272 lncRNA upstream 107489 9152879 ~ 9155815 (+) True G3044
TU4271 lncRNA upstream 126897 9136191 ~ 9136407 (+) True G3043
TU4269 lncRNA upstream 136605 9126183 ~ 9126699 (+) True G3041
TU4331 lncRNA downstream 101085 9407641 ~ 9496782 (+) True G3085
TU4304 lncRNA downstream 161061 9467617 ~ 9516145 (+) True G3069
TU4339 lncRNA downstream 195870 9502426 ~ 9525440 (+) True G3090
TU4337 lncRNA downstream 211715 9518271 ~ 9605820 (+) False G3089
TU4338 lncRNA downstream 211715 9518271 ~ 9524150 (+) True G3089
XM_039800816.1 mRNA upstream 149951 9037179 ~ 9113353 (+) False slit1b
XM_039800826.1 mRNA upstream 149951 9037452 ~ 9113353 (+) True slit1b
XM_039800994.1 mRNA upstream 236159 9018002 ~ 9027145 (+) False arhgap19
XM_039800864.1 mRNA downstream 32163 9338719 ~ 9366798 (+) True LOC120559260
XM_039800873.1 mRNA downstream 32163 9338719 ~ 9366798 (+) False LOC120559260
XM_039801088.1 mRNA downstream 77031 9383587 ~ 9395587 (+) False LOC120559385
XM_039801072.1 mRNA downstream 77031 9383587 ~ 9395587 (+) False LOC120559385
XM_039801094.1 mRNA downstream 77031 9383587 ~ 9395586 (+) False LOC120559385
TU4189 other upstream 369811 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 852369 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1171799 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1315051 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1563764 7699265 ~ 7699540 (+) True G2530
TU4342 other downstream 165544 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 185753 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 465019 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 619115 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 816595 10123151 ~ 10124118 (+) False LOC120559251

Expression Profile