RNA id: XM_039800864.1


Basic Information

Item Value
RNA id XM_039800864.1
length 5232
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC120559260
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9338719 ~ 9366798 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCATTATCACCGCGGTTATTGAGCTGCTCCAcggtccctccctccctctcccgcATGGACCGGAACCACGCAGTGCCACGTGACCGCGGAGCTCTGGACTGAACGAGCCTCTCTCACACCCGCATCATGGCTGCGGAGGATGCGGCCGCGCGGTCCCGAACCGGAGCCCTGCTCCCCCGCGGGGCTCCGCTCTCTCCTCcccgcctgctgctgctgctctccctggcCGCGGGCTCCCTGCTCCCCGCCCCGGCGCTCGGCTTGCTCGGCTTTCGGCCGGAGGAGACCGGAGCGGAGCTGTCCGTGGCGGACGGGGTGCTGAAAGCCACCGAGGGGACCCGCTTCATGCTGCGGGTTTATTACTCCACCTCCCCGCAGAGGCTGAACCGCACCGCGGCGACTCGCGCCAACAACGCCGCGCCCTGGGTCGCCTTCATCGAGGAGCCGAGTCCCGGGCGAGAGGGACAAGCTCACCCGAAGCGGAACATGTGCATGGACAAGAACGCCAGGACGTCCGACATCGAGGTTTTGGGCTCTTTCAAGTCCGCTTCCAGTCAAAACTCGGTGCTGGTGGAGCTGCTGGCCAAAGACCTGCGGAGGGGGGAGAAGATGAAATACTACTCCATGTGCGCCTTTGACGGATCCAAATGGGAACACTACCGGACGCGGGATTTCTGGGTGGCCGTGGTGGAGCGCTCGGCTGTCCCGGAGCTCTGGCTGCAGGTGCTGGTGTCCGTGCTGCTGCTCGGGCTCTCGGCGCTGTTCAGCGGGCTGAACCTGAGCCTGCTGGCGCTGGACCCGGTGGAGCTGCAGGTCCTCCAGAACAGCGGCACCGACAAGGAGCAGAACTACGCGCGGAAAATCGAGTCGGTGCGTCGGCACGGCAACTACGTGCTCTGCACTCTGCTGCTGGGCACCGCGATCATCAACGCCTCGCTCGCCGTGTGGATGTGCCAGATCCTGGGCATGACCTGGCTCTCCACGGTCATCTGCGCCTTCGGCATCTTCTTCGTCGGGGAGATTCTCCCGCACTCGGTGGCGTCGCGCCACGGCCTCGCCATCGCCTCCAAAACCATCTGGGTGACGCGGCTGCTCATGGTGATCTCCTTCCCCATCTCCTACCCCATCAGCAAACTGCTGGACCTCATCCTCAACCAGGAGATCTCGAACTTCTACACCAGGGAGAAGCTCCTGGAGATGCTGCGCGTGTCCGACCCGTACCACGACCTGGTGAAAGAGGAGCTCAACATCATCCAGGGAGCGCTGGAGCTGCGGACCAAGACCGTGGAGGACGTGCTGACGCCGCTGAGCGACTGCTTCATGCTGGCCTCGGACGTGGTGCTGGACTTCAACACCATGTCGGACATGATGCAGAGCGGATACACGAGGATACCGGTGTTCGAGAACGAGCGCTCCAACATCGTGGACATCCTGTTCGTCAAGGACCTGGCGTTCGTGGACCCGGACGACTGCACCCCGCTGAAGACCATCACCCAGTTCTACAAACACCCGCTGCACTTCGTGTTCAACGACACCAAACTGGACGCCATGCTGGAAGAGTTCAAGAAAGGGAAGTCCCACCTGGCCATCGTGCAGCGGGTGAACAACGAGGGAGAGGGCGACCCTTTCTATGAGGTGATGGGCATCGTCACCCTGGAGGACGTCATCGAGGAAATCATCAAGTCAGAGATCCTCGACGAGACGGACCTCTACACTGACAATCGTACGAAGCGCCGTGTTTCTCACCACGAGCGGAAGCAGCAGGACTTCTCCATCTTCAAACTGTCGGAGAACGAGATGAAAGTGAACATCTCTCCTCAGCTTCTCCTGGCAACACACCGCTTCCTGTCCACAGAGGTGGAGCCCTTCAAACCCGCTCACATCTCAGAGAAGATCTTGCTGAGGCTGATCAAACACCCCAGCGTGGTTCAGGAACTCAGCTTCGACGAGAAGAACAAGCGAGCGTCGCAGCACTTCCTGTTCCAGCGCAACAAACCCGTGGACTACTTTGTCCTGGTCCTGCAGGGTCGAGTTGAGGTGGAGTTTGGTAAGGAGGCGCTGAAGTTTGAGAATGGAGCGTTTTCCTACTTTGGGGTTCCTTCCATCATGCCAGCAGTCCACAGATCCCCCTCTCGCAGCAGTGGTTTGGACCGCTCTGAGTCCATGCTGTACGGAGGCAGCATGAGCCAACTAAACGGTGGGGGGAACGTCTACCTGCCAGACTACTCTGTCAGACAGCTCACACATCTGCAGATCATCAAGATCACCCGGAGCCACTACCAGAACGCTGTGACAGCCACCCGGATGGACAGCTCTCCTCTGACGCCGGATGCAGACGGCCGTCTGGCAGAAGGCAACGGCCCAACCCCAGAGGCCCCGGCCGCGGAGCACGGCGCCACGCTGATGCCCCCGgggcacagcagcagcagcagcaccaccaccaccactctcATGCCCCCACCCAGGGAGCACGGCCGGCCCAGCTCCGCCCGAACCCGAGGACAGCAGTCCAGCGTCCCGCACAGCACCTCGCTGCTGAACGAGAAGAACCGCATCGTCCGCAGCAAGTCTGACGGCCAGAAGAGCCCCAGCGACTCAGTGTTTCTCAGGATGGATGAGATCCCTTACATCAGGGAGGACAGATCTGAGGCCGACGCGCACACTGACATGGCCTCTGTTCCCATAGAAACGGACACGTCCCCTTTCATCAGCAGCCTGTCCCTCAGCGGCTCAGAGGACACACTGGGCAAGAAACTCCTGCTCAAACTCAGCcacaagaagaggaaaaaatcCCGCGAAGGAGAAAGAACACCAGAGGACATTTCAGAACAGCCGCTGGTGAAAACCTAgcagcgtgcgtgtgtgcgtgaatgtgtgcgcgcgcgtgcgtgtgacGGACCCGGACATTCAATCATCTGATGGTTCTTTAAGTTGTTTGTGAAGACGATGTGGTTGGTGAACTACAGCTATCAGAGTTTTATCTGAAAACAacacaccccctccccccctcccactGTGGGAGTTTATAAAGTGGACCCATCCACAGATATGTACTGAACTCATGGATGGAAGACATcagtttataaaaataaaaaaaacggggGGGTCGCAGCTTTGCAATATGCATTATACTGGAACTTCACAGGTTTTTTCATGCTGATGCTTGTAAAGGAATGACTGTGAATGTTAAAGGTTTGTAGAAAATAATAgttttatactatatatagtatatatatgatCACTTCTCCAATGGAGCTGAGGGGAATAACAGTACACAGGAATCGGATGGAAGACACCAAAGACGTTGCTGTTTTTATACTGCCCCGAATTGCATGGGGACATCTCAACAGAACAGAAGTAAACTGGCCGCTTTGTGCTCAGGCTTTTGGTTTGAAAGGTCTCTTGATTAATGTTGCTTGTTTACCTGCTAATGAGATCTATAGTCTAACATGAACCGACAACAAATATTATTCTTTTCGTCTTCTATTTATGTACGGACAAGCATTTTATATCCAGATTGTGTCCgtttttaaaacatttcccTCCCTTTTTCCAAAATGCAGATTGGCACACACGTCTAATAAGATCTTTACAAACCAggggcatttttttttcttcttttttcttgcgATCAATTTGCacatcaatatattttttttcccactgttttttgttgttgtcatgaGTTCTTTCACAAAGATCGCAAATATGACGCAGTGACAAAGCGACACCTAATCTTTTTTTCCAAACAATGTTGATTTTTCTGAGCTCCTGTtgcataaaacaacaacaacatgggTTCACATAGCCTGAACACAGAGCCACCCGAGGCGACAAACTTTTACTGCTTTCAACCTTGACTAAGGCAGCGCATATCATATCCACTTCTTTTAattacctttcacaataaaagtcctcgATGGCGTAACTGCTTACCTGTCGGCAGGGTCCACAGTTAGCACCAGCCACCAGCCAAACGCTGATAatatatgcaagtggctggtagatttgcgtcactcaccagccaaaaaaaacaatggtaatttATTGAGTGTCTGGTCAAATTTTAACATtaactagccatttggctggtggaaatttgtttttattttgtacccTGCCTGCCGGTAGCCTATAAATATTCCGAAGTGAGGATTTCGCATTTTCGTGTTGTTTATTCATAACGCTCCCAGTGTGTAAAGGCCTTAAGCAAGTACATAAtgtggccaaaagtatgtggacgcCTCTGTTTTTCTGGTTTGGGCCGCCTACTTACAATGAACGGAAGTCTTAATGCAACAGCATACAATGAATTTTAGACATAAATGTAACTTTGCATCAGTAGTTTTTGTATGTTAGTGTCAGGTGGTAAAAACACAAATGGTTGAAACGCCCGCTCTGCATCATCGCAGCTGTATGTTCAAACAGCAGGCTGACTCTGAAGTAGCTGATTGATTGTGCACCTTGTTATCTGACAATAGTCAGATTGGATTTGTATGGTTGTTCAATTGTTATGTTGCTTATTCTGCTTCGTGGTGAAACTCATCGCTATAACGCCTCCGCTTATCCAGAAATGACCCTcatccttttttgttttgagcTCTTCTTTTTCATTATCTGAGCCGAAAGTTTCATTTTGAAGATATGTGACGCAAATCGCATTTTTAtagctcataaaaaaaaaagtcttcttcTGAACCTTAGAGCGCTATTAGACTGTGGCTCAGACATGGATAGAAGACAGATTGGAGCCGCCTGTCTgcatatagatttttttttttaaatgtctttcatTTCAGTTCAGTTGTATTCATGACACGATGTGTGACCACTGAACCTCTTTAAATATTCTGCTCGTGCTGAGCCCTTTTCATTAGATCCATTTCAATTATAAATGAATCTCGTTTTCTCTAGCATTTCTTTATTGGAGGGGGAAATGAAAGTGTCTGCAAAGTGGCTGAAACTACTGTTGTTCCCCACAACATATGATGGTTGTATCCCCTTGTGTCATATAGGATGCCAAGATTACATCTGTTATTGGGTTTAGAAGATTATCTACACTGGAAACACATACCTCCAATAAGGCTCTGTTGCAGACTCGGATGTACAGTACGTCTTCACTCATCGGCGTCTCCAATCATttctcaaccaatcagcattaATGTAAATATTAATAACTAGCTTGACACAACTTGACTTTTCATCTTCACTTTAAATGTCACTGGACTGA

Function

GO:

id name namespace
GO:0030554 adenyl nucleotide binding molecular_function

KEGG:

id description
K16302 CNNM; metal transporter CNNM

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4308 lncRNA upstream 32163 9263304 ~ 9306556 (+) False G3072
TU4311 lncRNA upstream 32163 9304947 ~ 9306556 (+) True G3072
TU4289 lncRNA upstream 157533 9180723 ~ 9181186 (+) True G3057
TU4273 lncRNA upstream 174808 9161187 ~ 9163911 (+) True G3045
TU4272 lncRNA upstream 182904 9152879 ~ 9155815 (+) True G3044
TU4331 lncRNA downstream 40843 9407641 ~ 9496782 (+) True G3085
TU4304 lncRNA downstream 100819 9467617 ~ 9516145 (+) True G3069
TU4339 lncRNA downstream 135628 9502426 ~ 9525440 (+) True G3090
TU4337 lncRNA downstream 151473 9518271 ~ 9605820 (+) False G3089
TU4338 lncRNA downstream 151473 9518271 ~ 9524150 (+) True G3089
XM_039801224.1 mRNA upstream 58785 9250439 ~ 9279934 (+) False LOC120559502
XM_039801231.1 mRNA upstream 58785 9250439 ~ 9279934 (+) False LOC120559502
XM_039801236.1 mRNA upstream 62068 9250439 ~ 9276651 (+) True LOC120559502
XM_039800816.1 mRNA upstream 225366 9037179 ~ 9113353 (+) False slit1b
XM_039800826.1 mRNA upstream 225366 9037452 ~ 9113353 (+) True slit1b
XM_039801088.1 mRNA downstream 16789 9383587 ~ 9395587 (+) False LOC120559385
XM_039801072.1 mRNA downstream 16789 9383587 ~ 9395587 (+) False LOC120559385
XM_039801094.1 mRNA downstream 16789 9383587 ~ 9395586 (+) False LOC120559385
XM_039801080.1 mRNA downstream 17102 9383900 ~ 9395587 (+) True LOC120559385
XM_039801160.1 mRNA downstream 83298 9450096 ~ 9455515 (+) True LOC120559460
TU4189 other upstream 445226 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 927784 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1247214 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1390466 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1639179 7699265 ~ 7699540 (+) True G2530
TU4342 other downstream 105302 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 125511 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 404777 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 558873 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 756353 10123151 ~ 10124118 (+) False LOC120559251

Expression Profile