RNA id: XM_039801224.1


Basic Information

Item Value
RNA id XM_039801224.1
length 987
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC120559502
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9250439 ~ 9279934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGACGCTGAGGCAGCTCCTGCTGCCAGGGAACTAGCGGtggggagaagaaaaaaaaagaagcgaaATTGTCGCTGAGAGGAGCAGAAATCCTCCAACTGCCGCGTTGTTTTCAGTGATGTAGAGAAAAAGGACTGAGTTGCTCTTTAATAAAACAGCAGGACCCATGACCCTGACACGAGGTTCCTTCAGCTACTCCAATGGCGAGGAGTACCACGGCGAATGGAAAGAAGGTCTGCGTCATGGCCTGGGACAGCTAACCTTCAGCGACGGGACGTGCTACACCGGACAGTTTGAGAACGGCCTCTTCAACGGCTGCGGGGTGCTGGTCTTCCCCGACAGCTCCAGgTATGAAGGTGAATTTGTGCAGGGCAAATTTCAAGGCGCCGGCGTCTTCACTCGCTTCGACGGGATGAGGTTTGAGGGCGAGTTTAAAGGCGGATGCGTGGACGGCTACGGAGTGCTGACGTTTTCGGGCGGTGGCGGCGGCCAGGAGGGCCTGTTTGAGACCAACCAGCTGATGAGGAGGGAGAACAGCCAGGGGGCCGTGCAGAGAGCGCAGGCAGCAGCCGCCAAGGCCCGAGCTCTGGCCATGTGACCCGGACTACATCACCCACAGTGCCCCACTTCCAGGATCCCCCCCTCCTCTCGTGTTcacctctcacacactcacacttcagCCCGTGCCGGCCTGATGTCTGGCACTAAACGGAACCAAACCCATTACCGTAATCACCACTATAATGAGAAAATGAGGAAAGAGCATTCCATGTCTCTGTAATTGTTGTTTAACACGTGAACGGAAACAAAAGTCATGAACGACACAGAGGGAGTTTAACAAGTGCCTGAACAAAAAAACCTTCTACTGTGCTTTGGATACTTTGAATACTGCCTGActgttttaacaattttttcTTCTTAAGTGTCAatgttctttttgtgtttttttttttttttttttaaagctatttGTCTTTTCTCTGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4289 lncRNA upstream 69253 9180723 ~ 9181186 (+) True G3057
TU4273 lncRNA upstream 86528 9161187 ~ 9163911 (+) True G3045
TU4272 lncRNA upstream 94624 9152879 ~ 9155815 (+) True G3044
TU4271 lncRNA upstream 114032 9136191 ~ 9136407 (+) True G3043
TU4269 lncRNA upstream 123740 9126183 ~ 9126699 (+) True G3041
TU4311 lncRNA downstream 25013 9304947 ~ 9306556 (+) True G3072
TU4331 lncRNA downstream 127707 9407641 ~ 9496782 (+) True G3085
TU4304 lncRNA downstream 187683 9467617 ~ 9516145 (+) True G3069
TU4339 lncRNA downstream 222492 9502426 ~ 9525440 (+) True G3090
TU4337 lncRNA downstream 238337 9518271 ~ 9605820 (+) False G3089
XM_039800816.1 mRNA upstream 137086 9037179 ~ 9113353 (+) False slit1b
XM_039800826.1 mRNA upstream 137086 9037452 ~ 9113353 (+) True slit1b
XM_039801002.1 mRNA upstream 223294 9017973 ~ 9027145 (+) False arhgap19
XM_039800994.1 mRNA upstream 223294 9018002 ~ 9027145 (+) False arhgap19
XM_039801009.1 mRNA upstream 223294 9018002 ~ 9027145 (+) False arhgap19
XM_039800864.1 mRNA downstream 58785 9338719 ~ 9366798 (+) True LOC120559260
XM_039800873.1 mRNA downstream 58785 9338719 ~ 9366798 (+) False LOC120559260
XM_039801088.1 mRNA downstream 103653 9383587 ~ 9395587 (+) False LOC120559385
XM_039801072.1 mRNA downstream 103653 9383587 ~ 9395587 (+) False LOC120559385
XM_039801094.1 mRNA downstream 103653 9383587 ~ 9395586 (+) False LOC120559385
TU4189 other upstream 356946 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 839504 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1158934 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1302186 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1550899 7699265 ~ 7699540 (+) True G2530
TU4342 other downstream 192166 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 212375 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 491641 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 645737 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 843217 10123151 ~ 10124118 (+) False LOC120559251

Expression Profile