RNA id: TU4272


Basic Information

Item Value
RNA id TU4272
length 2937
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G3044
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9152879 ~ 9155815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTATTTTCACAACAAAATTTATTAGAAGAATAGTGGTTTTGAAAAGAAGGTTCTAGCATCCAGTGAATACTACCTCACACAACATTACAGCTGAAATGTGTGGCAAAAatggcaattttttttatttttgttttaccaAATTTAATAGAACATAACCAGTAAAATATTTTACACATGCACAAAGACAGATCTAAATCAGCGTCGCCTGACGTTCAATGCAAaatgaagtttaaaaaataacagtaggaaataaaatcatcatctttcatgtttttgtccaacaacaaaaaaaaaagaaatcacagaCATTAATGAGACAATTTATTATTCATCAGCCAAATCAGAATATCAGATTTAGCATTCAAAACAGGGCGAgcgaaagagagaaataaaatagtgctgtcaatcaaactgaAACCGATTATTGTGATCCTTGTTAAGTGCTCATTTACACGGACATAGATAATATAAGCCTAGAAGAATACAAGTCCAACTCACAAGGTACAAaataagaacaaaaacaaaattattgtacataaataaaactacaacgtgagaaaaatattttttaaattatacaattttttttgtcaaactgtAAACAGTAGATATTGAAAAAATGAGGTCCATTTGGGGGATTTGGAGAacctgtgtgtagttgtgtgtgtgtttatatgcgTTTGCGAGAGGTACAGTCCAGGTGGGACCAAATCGTGAAAGGGGGCTTGGGCGTCCTGAGCATCGGCACAGCGACCCACCCAACCCCAGGGCCCGCCGGACTGAAGGAATGAGGTATATCGTCAAACCCAAAAACTAAATCTCAGcgggaaagaggaaaaaaaaaagcccagcaGGCCCTGCAGCGGGGCGTCCAGCCACCCGTTAAGAACCGAGTTGTGATAACGAAACGTtagaaacctaaaaaaaaaaaaatctaatcaaattgTGGTTTTACCCAAACAACAGTCCAAACCCCTGGACAATACTTCCTGCGTTTACCTAAATATTTCCAACCCAATCAGAAAGtctaaaaaattaaaatcagcTTACTACCAAAACCAATATCAGGAATGTAAAAAGCAATCTTAAGAGTTCTTACAACATGAAATAACAACTTCGTCTTTCAAGAGTCTTAACGCAGTTCTCACCAAAACGTCCACTGATTCGATTGTTGTAAGAGGTACAAAATGTAGGCAAAATACACTCCCCGTCGTCCCGACCACGCCGATAAATAACTGCTTTTGCATGACAAGGTCTTATTACGCACTCTAAAGTCTACGGGAGACTTTCCAAAAATCCATGGCATGGACCAAGCTGTGTGCAGCGACACAAACAAACGATCACAGCAGAAGAAGCGCGGCTGTCTAAAAGAGTCCAAGAACAAATGCGATCGATTTCACCGACAACTGCAAAAGCAGATCTTTCTGCTCCAGTTTGACTCTCCTTGTTCTCCTTCACAGCTCTACGGTTCGGCAGGTTTTGATCACGCAACGTCCGGCTGAGCTCCGGGCACTTTGTCCTGCTTTCCGTCGCGGTGAGAGAGGCTTGCTAAACTTTTCCCTGAAGCGTAAGAAGAAGAACTGAAGGCAGATCTGTCACAttcctctgtgttgtgtgtaacTCCATTAGCGACGGAGAGATCAAACTCACAAACCAACGTACTGCTGTGAGGGATtgtggaggcttaaaacactgTTAAAGAGCCAAACCACTGTTTTGTGCACTTGTATGAATGCTTTAAGAGGTCAGCTTGGTGTAAGTCATCGTTACGCGGGTGCTTTGTAGCCACACAACACCAAATGCCAGCGCGGATGCTCGGCACGGAGTAAACGTCATGGCACCTGGCACAAGTCAGCGAGAGAACAAGAGCGCGAACGAGGACCCAGCAGTCCCGAACGGAGAAGAAGATTGACATTCGTAAGATACTTCAAATATCCAAAGatcagaaaaagagacagagacagctAAAGTACAAAAGGAGAGATGTAATCCCGTaagtagaaaataaaataacaaaattctGACGGCGAGAAAAGCTGCATCTGATCGTTTTTTAAGATTTTGGCGGGGTCATTTCTGTCATCATAGAACAGGCttatgaaaataaatcagaatTAAGGTTGATCACTGCTAAAACTCGGTGTAGATTAAGTACCTGAATAAGAGTGAGAGCAGTGCTGTTGACGGTCCCTGAGGGTGTGTGCGGGTGATGTCATTTGGGGTCTATAAGTCGCCCAGAGATAGGCGTCCTTTCCTACAGACAGCCAGGATACGTTCAGAGATGCAATTCTTCAAACTTGTACACCGTTCCATTGAGTACAGGTAGATCAATgtttctaaaaaaaactgcTCTGAGGCAAGAATATGGTTAAAGAAAAACTGAGGAAAAGCCACACAGACTCACTCATACATACTTTTTTTCGTTACTTtacacaaggaaaaaaaaaataaaaacgattGAAAAAGAGCTTTAGCCAAAAACCACTACGAAAGCTGTTGCAGTGACAAACAAACACCTTAGGTGCTCCTTCTTCTCAggaaagggattttttttttttctcatagggGCAATATTTCATATTCAAAAAACATCAGAATCGGTCCTGCGGACAACATCCAAAAAAAAGCGCTTTTGGATCAATCAGCCTCTTCAAACAAAAAGGACTGATAGAGAGGTATTTACAGCAGCATGCAAAAATATCGAGAGGGTCAACAAGCGAAGCGTTTTATGTAACAACTTCATTGTCTGTTCAACAAGATCATCCCCtaaccccccccgcccccccgccTCCCTCCACTTCCTCCATTTAAAACAGTCTTTACTTTTCtagacataaaaacacacaagccGTTCCTCCGCAGTGCCTTTCAATATACAGTTCCACCTCACCTGTGAAAAAGACAGGCAAGGGTTGATGGGTAAAGCAGTTCTATG

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4271 lncRNA upstream 16472 9136191 ~ 9136407 (+) True G3043
TU4269 lncRNA upstream 26180 9126183 ~ 9126699 (+) True G3041
TU4257 lncRNA upstream 122253 9028783 ~ 9030626 (+) True G3031
TU4200 lncRNA upstream 210757 8941879 ~ 8942122 (+) True G2986
TU4194 lncRNA upstream 229405 8923167 ~ 8923474 (+) True G2980
TU4273 lncRNA downstream 5372 9161187 ~ 9163911 (+) True G3045
TU4289 lncRNA downstream 24908 9180723 ~ 9181186 (+) True G3057
TU4308 lncRNA downstream 107489 9263304 ~ 9306556 (+) False G3072
TU4311 lncRNA downstream 149132 9304947 ~ 9306556 (+) True G3072
TU4331 lncRNA downstream 251826 9407641 ~ 9496782 (+) True G3085
XM_039800816.1 mRNA upstream 39526 9037179 ~ 9113353 (+) False slit1b
XM_039800826.1 mRNA upstream 39526 9037452 ~ 9113353 (+) True slit1b
XM_039800994.1 mRNA upstream 125734 9018002 ~ 9027145 (+) False arhgap19
XM_039801224.1 mRNA downstream 94624 9250439 ~ 9279934 (+) False LOC120559502
XM_039801231.1 mRNA downstream 94624 9250439 ~ 9279934 (+) False LOC120559502
XM_039801236.1 mRNA downstream 94624 9250439 ~ 9276651 (+) True LOC120559502
XM_039800864.1 mRNA downstream 182904 9338719 ~ 9366798 (+) True LOC120559260
XM_039800873.1 mRNA downstream 182904 9338719 ~ 9366798 (+) False LOC120559260
TU4189 other upstream 259386 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 741944 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1061374 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1204626 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1453339 7699265 ~ 7699540 (+) True G2530
TU4342 other downstream 316285 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 336494 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 615760 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 769856 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 967336 10123151 ~ 10124118 (+) False LOC120559251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042463 True 16412 lncRNA 0.37 2 NC_007133.7 34818030 ~ 34834557 (-)