RNA id: XM_039794452.1


Basic Information

Item Value
RNA id XM_039794452.1
length 4139
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC120555608
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8865659 ~ 8889555 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCCACTCCTCCCCCGCTTCATCTCCTTCACGTTCCCcagctcagccaatcagagtgcTTGGTGGGGGCAGGGCTTAGTAGAGCCACCATTCCACAGCAGAGCTGCTGCATCTCCCCAGAGCTAACAGGGAGCTAGCAgcacagagggaggagacacGCTCAAACccagcctctgtgtgtgttgtgtgtttaagtgtgttggggtgtgggtgtgtgtgcgtgtgttgcaGACTAGCAGGAACGGCTGCTGCTGCGCTCTTGTTTTAGCAGACTTTTTCCTTTTAACCTTGCCTTGCCACGGTGCTTAGCTTGGGCCTGCTTCTTCCTTCACTTCAGGATAAAGAGGGATCAGCGCAGGGGGCAACAGGAGAGAGAACGCACGGCAGgcttcctccccctcctccttacCATCTCATAGTCGCTGACAGCTCCTGGCGGACGTGCAGGCAGGATGATAGCGGCTCAGCTTCTGGCCTACTACTTCACTGAGTTGAAGGATGATCAACTCAAGAAGATCGATAAGTACCTGTACTCCATGCGTTTCTCGGATGATACCTTGAAGGACATCATGAACCGGTTCCGCAGGGAAATGGAGAACGGGCTCGGCCGTGACACCAGCCCCACCGCCTCCATCAAGATGCTGCCCACCTTCGTCAGGTCCATCCCTGACGGATCAGAAAAGGGGGACTTCATAGCACTGGACCTCGGTGGGTCGAACTTTCGGATCCTGCGTGTCAAAGTGACGCAGGACAAGAAGCAGCCGGTTCAAATGGAGAGCCAGGTCTATGAGAcccctgatgacatcattcaCGGCAACGGGTCACGGCTCTTTGGCCATGTTGCAGATTGCCTGGGCGACTTCATGGAGAAGCAAAAAATCAAGGATAAAAAGCTTCCTGTGGGATTTACGTTCTCCTTCCCCTGTGCCCAAACCAAACTAGATGAGGCGGTTTTACTGACGTGGACAAAGAAGTTTAAAGTCAGTGGTGTAGAAGGCGTAGATGTTGTGAGTCTTCTGAACAAGGCTATCAAGAAACGAGggGACTATGAGGCAGACATCATGGCGGTGGTGAATGACACAGTTGGCACCATGATGACCTGCGGATTTGACGATCAGCGCTGTGAAGTGGGCATCATCATAGGAACGGGAACAAATGCCTGCTACATGGAGGAATTGCGTCACATTGACCAGGTGGAAGGAGACGAAGGCCGGATGTGCATAAACACCGAGTGGGGTGCCTTCGGGGACGATGGGTCCCTAGAGGACATTCGCACAGAGTTTGACCGCGAGATCGACAGAGGCTCCATCAACCCAGGAAAACAGCTGTTTGAAAAAATGGCCAGTGGGATGTACATAGGAGAGCTGGTTCGACTCATTCTGGTCAAGATGGCCAAAGAGGGGCTGCTATTTGAGGGACGGATAACCCCCGAGCTCCTGACGAAAGGAAAGATTGAGACGAAACATGTTTCTGCCATTGAAAAGAGTAAAGAAGGGCTGAAGAAATGCATGGAAATCCTAACAAGGCTCGGGGTGGAGCCTTCAGATGAAGACTGTCTGGCTGTGCAGCACGTGTGCACCATCGTATCCTTCCGTTCAGCAAATCTAATTGCTTCAACACTAGGAGGCATCCTCTGTCGTCTTAAGGAAAACAAAGGAGTCACACGCCTACGCACCACTGTGGGCATCGACGGCTCTCTCTACAAGATGCACCCTCAATATGCCCGCCGTCTGCACAAGACCGTGCGTCGCTTGGTCCCAGACTCAGATGTCCGCTTCCTGCTGTCTGAGAGTGGGAGTGCGAAAGGAGCGGCCATGGTGACAGCAGTGGCGTACCGTTTGACGGAGCAGGCGCGCCAGATTCAGCAGACGATGGCAGAGTTCCGGCTGAGCAAAGCGCAGCTGCTAGAAGTGAAGAAGCGCATGAAGGTGGAGATTGAAAGAGGCCTCAAGAAGGACACCCACAAGGAAGCTACAGTCAAAATGTTGCCTACTTTTGTCCGAAGAACACCAGATGGAACAGAAAACGGAGATTTCCTCGCTCTGGACCTCGGAGGAACAAACTTCCGTGTGCTTCTGGTAAAGATTCGCAGCGGGAAGAAGCGATCAGTGGAGATGCATAATAAAATCTACGCCATTCCCATAGAAGTCATGCAGGGCACAGGAGAAGAGCTCTTTGACCACATTGTGTACTGCATCTCCGACTTCCTGGACTACATGGGAATGAAAAGCGCTCGCCTGCCGCTGGGTTTCACCTTCTCCTTCCCCTGCCATCAGACCAGCTTGGATGCAGGTATCCTCGTAACCTGGACCAAAGGATTCAAGGCCACAGACTGTGAGGGTGAAGATGTGGTGGAGCTTCTTCGGGAAGCGATCAAGAGGAAAGAGGAGTTTGAGTTAGATGTGGTTGCCATAGTGAACGACACAGTGGGGACGATGATGACCTGTGCATACGAGGAACCCAACTGTGAGGTTGGGCTGATTGCAGGGACCGGCAGTAACGCCTGCTACATGGAAGAGACGAAGAACATCGAGATAGTGGAGGGAAATGAGGGCCGTATGTGTGTCAATATGGAGTGGGGAGCGTTTGGAGACAACGGCTGCCTGGATGACATCAGGACAAAGTACGACCAGGCGGTGGATGAGAACTCGCTCAACGAAGGCAAACAAAGATATGAGAAGATGTGCAGCGGTATGTACCTTGGAGAGATCGTCAGGCAGATTTTAATTGATCTGACAAAGCGTGGCTACCTCTTCCGGGGACAAATCTCTGAGACGTTGAAGACCAGGGGCATCTTTGAGACAAAGTTCCTGTCACAGATAGAGAGCGATCGTCTGGCGTTGCTGCAGGTCAGGGCGATCCTGCAGCAGCTGGGGCTCGACAGCACCTGTGATGACAGTATTATCGTCAAGGAGGTGTGTGGCACGGTGTCCCGCCGCGCCGCTCAGATCTGCGGAGCCGGTATGGCTGCTGTGGTGGACAAGATCCGTGAGAACAGAGGACTGGACCACCTGGACATTACCGTGGGCGTGGACGGCACGCTCTACAAGCTGCACCCACACTTTTCTCGGATCTTCCAGCAGACGGTCAAGGAACTCGCCCCAAAATGTGACGTCATCTTCCTGCTATCCGAGGATGGCAGCGGCAAGGGTGCCGCCCTCATCACTGCCGTGGGCTGCCGCCAGAGAGAGCTAGACGCGCAGCAGCAATGAGGTGCTCGGCTGCGTTTGTCCTGAAGAACTACCTGCTGCTCCACCCTGACCTTCACCCTCCCCCCAGCGCACAGCCCAACTCCAGCTCCCCTTGGCAGCCGTGACTCCACCTCTGCGCCACCTGGCCCCCCTCCCACAGCCAGAGAGTCAAGCTGCATGAATAGGGAATTAAATAGCTAAGTATTCATTTGTACTGCACCGGATGGTTTATTATTTCCAGGTTTGTACATTTTCCTCAATAGCTTGTCAGTAATCTAATAAATCTTAACTCCTTAGGTGTGCAATATTTGTGTAttgctaattttatttttatatggaGGCAAATATATAATTGTATTTATAAAGCTGAGGCCACTTTGCATCCCAGAGGTCATTAACATTTTTCACCTTAGACACAAGAAAACCCCGGCACTTTTTATATGAGAGTTACAAACGCAGCATTTATATGTAACTTACTTCCTTAAATGAAGGACGTCCTTCTCACTGAATGACGAAACTCATTTTTAcaagttgaaggagctgatgggattacatttcactggaaatGTACCGTGTGCGATTTAATGTGATAGATACAATcgtttgattgattgactggTTCAGAAAAACAGTCTCGCTGAAAAGCGTTGAATGCAAGAGTCACGGCTGTTCAAACCATCCTCGTTCATGTGCTACATGCTCACACAACATGCTTTGCAACTTACCACTTTTTGTGTAGCTATCAATGTAACTCACATATTAAAGTATTCCAGCATCACCATACCATTTATTCCTCCGGAGCTGAGAGGGTAGTAAAGGCCCAAGATGAAGTGTTAGCGTATCCTGTTGCTATGTGTGAACTACTATACTTTTGGTGTTGTGATGAATCCCACTTCTACTCATTGTACGTGCAAAGAATAAATGTTTATCGGGCGGGAGTGGATCCTA

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004396 hexokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4160 lncRNA upstream 64910 8800467 ~ 8800749 (+) True G2947
TU4159 lncRNA upstream 65388 8799365 ~ 8800271 (+) True G2946
TU4155 lncRNA upstream 85133 8776022 ~ 8780526 (+) True G2942
TU4106 lncRNA upstream 144999 8720240 ~ 8720660 (+) True G2909
TU4084 lncRNA upstream 163204 8694720 ~ 8702455 (+) False abcc10
TU4186 lncRNA downstream 17084 8906639 ~ 8909986 (+) False zbtb45
TU4194 lncRNA downstream 33612 8923167 ~ 8923474 (+) True G2980
TU4200 lncRNA downstream 52324 8941879 ~ 8942122 (+) True G2986
TU4257 lncRNA downstream 139228 9028783 ~ 9030626 (+) True G3031
TU4269 lncRNA downstream 236628 9126183 ~ 9126699 (+) True G3041
XM_039790180.1 mRNA upstream 66732 8793045 ~ 8798927 (+) True lgsn
XM_039776631.1 mRNA upstream 91611 8745932 ~ 8774048 (+) True col9a1a
XM_039811785.1 mRNA upstream 133149 8720732 ~ 8732510 (+) True mrpl4
XM_039811057.1 mRNA upstream 151563 8704867 ~ 8714096 (+) True si:ch211-69b7.6
XM_039808757.1 mRNA upstream 165042 8670174 ~ 8700617 (+) True abcc10
XM_039800068.1 mRNA downstream 1760 8891315 ~ 8911908 (+) False zbtb45
XM_039800066.1 mRNA downstream 1761 8891316 ~ 8907964 (+) True zbtb45
XM_039815502.1 mRNA downstream 42510 8932065 ~ 8937228 (+) True LOC120568168
XM_039801002.1 mRNA downstream 128418 9017973 ~ 9027145 (+) False arhgap19
XM_039800994.1 mRNA downstream 128447 9018002 ~ 9027145 (+) False arhgap19
TU3639 other upstream 454724 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 774154 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 917406 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1166119 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1652103 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 1893 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 582545 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 602754 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 882020 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1036116 9925671 ~ 10136159 (+) True G3117

Expression Profile