RNA id: TU4106


Basic Information

Item Value
RNA id TU4106
length 421
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2909
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8720240 ~ 8720660 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataaggagcaaggttacctcccctttctctgctttgcccgcccagagaatttggcccgctcatgagagagagagacatcatggctttcaaacgagcaaagtggcagttggtcaaggccacacccccaccctccaccttgcccccccccctctctcctcctcaatagctacagacacagaaatggcacatcctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggg

Function

GO: NA

KEGG:

id description
ko05225 Hepatocellular carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4084 lncRNA upstream 17785 8694720 ~ 8702455 (+) False abcc10
TU4085 lncRNA upstream 18335 8694720 ~ 8701905 (+) False abcc10
TU4083 lncRNA upstream 18384 8694720 ~ 8701856 (+) False abcc10
TU3779 lncRNA upstream 75124 8644435 ~ 8645116 (+) True G2714
TU3793 lncRNA upstream 77097 8640061 ~ 8643143 (+) False socs7
TU4155 lncRNA downstream 55362 8776022 ~ 8780526 (+) True G2942
TU4159 lncRNA downstream 78705 8799365 ~ 8800271 (+) True G2946
TU4160 lncRNA downstream 79807 8800467 ~ 8800749 (+) True G2947
TU4186 lncRNA downstream 185979 8906639 ~ 8909986 (+) False zbtb45
TU4194 lncRNA downstream 202507 8923167 ~ 8923474 (+) True G2980
XM_039811057.1 mRNA upstream 6144 8704867 ~ 8714096 (+) True si:ch211-69b7.6
XM_039808757.1 mRNA upstream 19623 8670174 ~ 8700617 (+) True abcc10
XM_039808749.1 mRNA upstream 26038 8670171 ~ 8694202 (+) False abcc10
XM_039808730.1 mRNA upstream 26038 8670171 ~ 8694202 (+) False abcc10
XM_039808740.1 mRNA upstream 26038 8670174 ~ 8694202 (+) False abcc10
XM_039811785.1 mRNA downstream 72 8720732 ~ 8732510 (+) True mrpl4
XM_039776631.1 mRNA downstream 25272 8745932 ~ 8774048 (+) True col9a1a
XM_039790180.1 mRNA downstream 72385 8793045 ~ 8798927 (+) True lgsn
XM_039794452.1 mRNA downstream 144999 8865659 ~ 8889555 (+) True LOC120555608
XM_039794442.1 mRNA downstream 145451 8866111 ~ 8889555 (+) False LOC120555608
TU3639 other upstream 309305 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 628735 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 771987 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1020700 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1506684 7213485 ~ 7213556 (+) True trnae-uuc_49
TU4189 other downstream 170788 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 751440 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 771649 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1050915 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 1205011 9925671 ~ 10136159 (+) True G3117

Expression Profile