RNA id: TU3659


Basic Information

Item Value
RNA id TU3659
length 234
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G2614
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8167739 ~ 8297950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccggccctgaggagctgtaatagttatgctggaagtttagcattcacgttaaaatggacaaacgaccaccaaagtgcaagggaggtgcagagaaattatgggagaaaaagattaagaatctacaggcggatgcCTGTGCCAACAtgtctgacatgtttggggctgtagtagctgcttcaacatcagcattacctgaagtagaggaggaggagaggtggctggctatacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3679 lncRNA upstream 2022 8240740 ~ 8286574 (+) True G2630
TU3633 lncRNA upstream 18051 8214193 ~ 8270545 (+) False G2598
TU3625 lncRNA upstream 18051 8244296 ~ 8270545 (+) False G2598
TU3676 lncRNA upstream 35497 8231628 ~ 8253099 (+) True G2628
TU3677 lncRNA upstream 35497 8251948 ~ 8253099 (+) False G2628
TU3745 lncRNA downstream 162137 8460087 ~ 8463648 (+) False G2685
TU3746 lncRNA downstream 162137 8460087 ~ 8463648 (+) True G2685
TU3748 lncRNA downstream 169111 8467061 ~ 8495618 (+) True G2687
TU3730 lncRNA downstream 172604 8470554 ~ 8509264 (+) True G2670
TU3752 lncRNA downstream 176947 8474897 ~ 8477720 (+) True G2689
XM_039800295.1 mRNA upstream 73555 8211071 ~ 8215041 (+) True LOC120558930
XM_039800252.1 mRNA upstream 173402 8109343 ~ 8115194 (+) True LOC120558905
XM_039804264.1 mRNA upstream 224096 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA upstream 224096 8052523 ~ 8064500 (+) False ccsapa
XM_039804256.1 mRNA upstream 239209 8038319 ~ 8049387 (+) True acta1a
XM_039800189.1 mRNA downstream 74907 8372857 ~ 8380700 (+) True LOC120558872
XM_039811024.1 mRNA downstream 103765 8401715 ~ 8415076 (+) True LOC120565323
XM_039803257.1 mRNA downstream 265098 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 319433 8617383 ~ 8643702 (+) True socs7
XM_039816357.1 mRNA downstream 319433 8617383 ~ 8643702 (+) False socs7
TU3609 other upstream 197091 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 340343 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 589056 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 1075040 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 1075562 7212963 ~ 7213034 (+) True trnae-uuc_48
TU3639 other downstream 111907 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 593498 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1174150 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1194359 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1473625 9771575 ~ 9772935 (+) True G3148

Expression Profile