acta1a (actc1a,act2,zgc:86709,LOC105024319,LOC102689871,LOC100534413)


Basic Information

Item Value
gene id acta1a
gene name actc1a,act2,zgc:86709,LOC105024319,LOC102689871,LOC100534413
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8038319 ~ 8049387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039804256.1
ATGGACGACGAGGATCGGTAGAATTCCTGTCGAATACTCGGACATTCCTAACGGCTGTCTGGGGAGAAAAAAACCGTCTCCGCGTGGTATGGAGGAGATAGAGTATATAAGGACCCCGGTGGGCGCTGCCCGTCACCCCTCTATCTGGAACCAGCAGCGGTTAAAGATCCTTCACTGACAGCCGGAGACAAGCAGAGAAGCCGCAGACATGTGTGACGACGACGAGACCACCGCCCTCGTCTGTGACAACGGCTCCGGCCTGGTGAAGGCTGGCTTCGCCGGAGACGACGCCCCCAGGGCCGTGTTCCCCTCCATCGTGGGACGCCCCCGTCACCAGGGCGTGATGGTCGGTATGGGTCAGAAGGACTCGTACGTGGGCGACGAGGCCCAGAGCAAGAGGGGCATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCGCCCGAGGAGCACCCCACCCTGCTGACGGAGGCGCCGCTCAACCCCAAAGCCAACCGGGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACGTCCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCGCTCTACGCCTCCGGTCGCACCACCGGTATTGTGCTGGACTCTGGCGATGGCGTGACCCACAACGTTCCCATCTACGAGGGCTACGCCCTGCCTCACGCCATCATGCGTCTGGACCTGGCTGGTCGCGATCTGACCGACTACCTGATGAAGATCCTGACCGAGCGCGGCTACTCCTTCGTCACAACCGCTGAGCGTGAGATCGTGCGCGACATCAAGGAGAAGCTCTGCTACGTGGCTCTGGACTTTGAGAACGAGATGGCCACggccgcctcctcctcctccctggaGAAGAGCTACGAGCTGCCCGACGGTCAGGTCATCACCATTGGCAACGAGCGTTTCCGCTGCCCCGAGACCCTGTTCCAGCCCTCCTTCATCGGTATGGAGTCCGCTGGTATCCATGAGACGGCGTACAACAGCATCATGAAGTGTGACATCGACATCCGCAAGGACCTGTACGCCAACAACGTGCTGTCCGGCGGCACCACCATGTACCCGGGTATCGCTGACCGCATGCAGAAGGAGATCACGGCTCTGGCTCCCAGCACCATGAAGATCAAGATCATCGCCCCTCCGGAGCGTAAATACTCGGTGTGGATCGGCGGCTCCATCCTGGCCTCCCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGGCCGGTCCCAGCATCGTCCACCGCAAGTGCTTCTAAACACGCGGCCGCCGCCCAATAACACGAATAACACGAAAACAACGAGATCTTCTACATCAATCGTGTGGCGGCTTAAActgtacatatgtttatttattcctTTTGTTATGTCATGCAATGTTTTTAATATGTTGATTGTGAAAGCTTTGAGGTACGACACGCTCCAGCTCGGACCAACTgaggaaaaaggagaaaatgtTAGGAaagaccaaaaaaagaaaaacaagacaataagacaaataaagtccatttattttcacttacaAA

Function

symbol description
actc1a Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).

NR:

description
actin, alpha cardiac muscle 1

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039804256.1 True 1609 mRNA 0.57 7 8038319 8049387

Neighbor

gene id symbol gene type direction distance location
nup133 nup133 coding upstream 6455 7979869 ~ 8031864 (+)
ifngr1 NA coding upstream 125169 7900622 ~ 7913150 (+)
LOC120565283 NA coding upstream 149945 7876002 ~ 7888374 (+)
LOC120562006 NA coding upstream 164719 7866252 ~ 7873600 (+)
LOC120565228 NA coding upstream 204812 7827589 ~ 7833507 (+)
ccsapa NA coding downstream 3136 8052523 ~ 8064500 (+)
LOC120558905 NA coding downstream 59956 8109343 ~ 8115194 (+)
LOC120558930 NA coding downstream 161684 8211071 ~ 8215041 (+)
LOC120558872 NA coding downstream 323470 8372857 ~ 8380700 (+)
mrpl45 mrpl45 coding downstream 513661 8563048 ~ 8575327 (+)
G2569 NA non-coding upstream 20411 8017443 ~ 8017908 (+)
G2566 NA non-coding upstream 60027 7977959 ~ 7978292 (+)
G2565 NA non-coding upstream 61822 7976161 ~ 7976497 (+)
G2564 NA non-coding upstream 62438 7975669 ~ 7975881 (+)
G2562 taf5l non-coding upstream 63285 7974273 ~ 7975034 (+)
G2574 NA non-coding downstream 6112 8055499 ~ 8078861 (+)
G2579 NA non-coding downstream 17876 8067263 ~ 8068163 (+)
G2578 NA non-coding downstream 19098 8068485 ~ 8071378 (+)
G2580 NA non-coding downstream 22220 8071607 ~ 8195985 (+)
G2582 NA non-coding downstream 29838 8079225 ~ 8081486 (+)
G2557 NA other upstream 90066 7941547 ~ 7948253 (+)
G2530 NA other upstream 338779 7699265 ~ 7699540 (+)
G1973 NA other upstream 1503949 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 1601102 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 1635679 6385601 ~ 6402640 (+)
G2590 NA other downstream 40426 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 352328 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 567996 8617383 ~ 8643702 (+)
abcc10 abcc10,LOC107102248 other downstream 620784 8670171 ~ 8702455 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other downstream 841928 8891315 ~ 8911908 (+)

Expression


Co-expression Network