G2562 (taf5l)


Basic Information

Item Value
gene id G2562
gene name taf5l
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7974273 ~ 7975034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3579
acaaaacaagacacttAAGGACTTCATCttggggctttttgggaaacactgatccacatttcaCCATTTCCGGACATTTTCTAGACAATAAAACTAACTGATGTTTAAAACTAACATCAGTTAATCAAGAAAGAAAGCCTTCAGCATTAAAAATGAGAAAACAAAGactaatcggataagaaatctGAGTCtaataagaccaaaacgaccgattactCGACTCGTGGACTCCTGCGGGCCAGCCCTAAAGAGATTTAACCCTTCGGTCGACTCACTTCCTCCTCCAGCACGTCGCAGGCCAGGTGGATGAGCGACACGTCGGCGCGGTGCGGTTTGGCCTTCAGCTTCCTGGCCCGGAGGCTCCACAGCTTCACCGTGGAGCTGTCGAAGCCGGCGGCCAGCAGCCGGCTGTCGGCCGACACCTCGGCCGCGTTCAGCGTCTGCTCCGTGTGGTGGAAGGCGTAGAAGCACACGGTGGTGAGCGTCGGGGGGCCCTCGCGGACCTTCTTGATGCAGTCCTGCAGCGCCTCCAGGGCCGCCTCGCTCTGCGGGATCCCCGCGGGGACCTCCACGCCCTCGCCGCCATCCGCCGCGTCCACTCCCGCCCAGGAGGAGGCCGAGGTGGAGTTCGGGGCCGCGGTCGCCCCGCCGGCAGCGCCGTACAGCTGGTAGTCGGTGCGCCTCGAGGCGGAGACCTCCACCTGCAGGCGAGGCAAGTTCATTTGTATAGTACAATTCATACACAAGCAGGATTTTCCTCGC

Function

symbol description
taf5l Predicted to enable transcription coactivator activity. Predicted to be involved in histone acetylation and regulation of transcription, DNA-templated. Predicted to be part of histone acetyltransferase complex. Orthologous to human TAF5L (TATA-box binding protein associated factor 5 like).

NR:

description
PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3579 True 762 lncRNA 0.44 1 7974273 7975034

Neighbor

gene id symbol gene type direction distance location
ifngr1 NA coding upstream 61123 7900622 ~ 7913150 (+)
LOC120565283 NA coding upstream 85899 7876002 ~ 7888374 (+)
LOC120562006 NA coding upstream 100673 7866252 ~ 7873600 (+)
LOC120565228 NA coding upstream 140766 7827589 ~ 7833507 (+)
LOC120563316 NA coding upstream 156998 7810774 ~ 7817275 (+)
nup133 nup133 coding downstream 4835 7979869 ~ 8031864 (+)
acta1a actc1a,act2,zgc:86709,LOC105024319,LOC102689871,LOC100534413 coding downstream 63285 8038319 ~ 8049387 (+)
ccsapa NA coding downstream 77489 8052523 ~ 8064500 (+)
LOC120558905 NA coding downstream 134309 8109343 ~ 8115194 (+)
LOC120558930 NA coding downstream 236037 8211071 ~ 8215041 (+)
G2563 NA non-coding upstream 3050 7970789 ~ 7971223 (+)
G2561 NA non-coding upstream 8997 7963257 ~ 7965276 (+)
G2545 ltv1 non-coding upstream 56692 7913752 ~ 7917581 (+)
G2534 NA non-coding upstream 165909 7752713 ~ 7808364 (+)
LOC120563307 NA non-coding upstream 199347 7770713 ~ 7774926 (+)
G2564 NA non-coding downstream 635 7975669 ~ 7975881 (+)
G2565 NA non-coding downstream 1127 7976161 ~ 7976497 (+)
G2566 NA non-coding downstream 2925 7977959 ~ 7978292 (+)
G2569 NA non-coding downstream 42409 8017443 ~ 8017908 (+)
G2572 NA non-coding downstream 73202 8048236 ~ 8048523 (+)
G2557 NA other upstream 26020 7941547 ~ 7948253 (+)
G2530 NA other upstream 274733 7699265 ~ 7699540 (+)
G1973 NA other upstream 1439903 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 1537056 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 1571633 6385601 ~ 6402640 (+)
G2590 NA other downstream 114779 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 426681 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 642349 8617383 ~ 8643702 (+)
abcc10 abcc10,LOC107102248 other downstream 695137 8670171 ~ 8702455 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other downstream 916281 8891315 ~ 8911908 (+)

Expression


Co-expression Network