G2580


Basic Information

Item Value
gene id G2580
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8071607 ~ 8195985 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3597
tgattaaataaggtaatgtctccaaacttacctcaattatgacttatctcctgctagttgtactacagcacttacatttaaaaaataagcatatgcctattttttaaaatattttagtatctcttttcggtgtggtagtttgtagacggtccctaattcaattcaattcaattatattttatttatagtatcaaatcataacataagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccaacaattccagtaattccctcaagagcaagcagtgcgacagtggcgaggaaaaactccctcttgggaagaaacctcggacagacccaggctcttggtaggcggtgtctgacgagccggttgggggtgtgatgaacagtggcgataatagtcacattaataatggaacagtgactggatgtagcgggaagctgcagggttcagcaggacgcagcatgacattgcagggcatcgctgagctcagcagggagtgcagcaggaccacggcgacagctgcaaccagggtcttggtgccaacgttctccaaggaaatacgctgggggaaaaaaaagcataaggactccggggagtaaactccccagaagctaggattagtaacaagcatttctgggacgggctgcacacaaatagtaatagtaatagtaatagtaacagtaatagaaacagtaatagaaagggagaggagagagcagctcagtgtgtcaaaggaaggaa
>TU3598
tgattaaataaggtaatgtctccaaacttacctcaattatgacttatctcctgctagttgtactacagcacttacatttaaaaaataagcatatgcctattttttaaaatattttagtatctcttttcggtgtggtagtttgtagacggtccctaattcaattcaattcaattatattttatttatagtatcaaatcataacataagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccaacaattccagtaattccctcaagagcaagcagtgcgacagtggcgaggaaaaactccctcttgggaagaaacctcggacagacccaggctcttggtaggcggtgtctgacgagccggttgggggtgtgatgaacagtggcgataatagtcacattaataatggaacagtgactggatgtagcgggaagctgcagggttcagcaggacgcagcatgacattgcagggcatcgctgagctcagcagggagtgcagcaggaccacggcgacagctgcaaccagggtcttggtgccaacgttctccaaggaaatacgctgggggaaaaaaaagcataaggactccggggagtaaactccccagaagctaggattagtaacaagcatttctgggacgggctgcacacaaatagtaatagtaatagtaacagtaatagaaacagtaatagaaagggagaagagagagcagctcagtgtgtcaaaggaaggaagtcccccggcagtctagaactataacagcgtaactaagggagacaggtcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3597 False 772 lncRNA 0.43 3 8071607 8195920
TU3598 True 818 lncRNA 0.36 3 8071607 8195985

Neighbor

gene id symbol gene type direction distance location
ccsapa NA coding upstream 7107 8052523 ~ 8064500 (+)
acta1a actc1a,act2,zgc:86709,LOC105024319,LOC102689871,LOC100534413 coding upstream 22220 8038319 ~ 8049387 (+)
nup133 nup133 coding upstream 39743 7979869 ~ 8031864 (+)
ifngr1 NA coding upstream 158457 7900622 ~ 7913150 (+)
LOC120565283 NA coding upstream 183233 7876002 ~ 7888374 (+)
LOC120558930 NA coding downstream 15086 8211071 ~ 8215041 (+)
LOC120558872 NA coding downstream 176872 8372857 ~ 8380700 (+)
mrpl45 mrpl45 coding downstream 367063 8563048 ~ 8575327 (+)
sp2 sp2 coding downstream 452074 8648059 ~ 8669290 (+)
si:ch211-69b7.6 NA coding downstream 508882 8704867 ~ 8714096 (+)
G2578 NA non-coding upstream 229 8068485 ~ 8071378 (+)
G2579 NA non-coding upstream 3444 8067263 ~ 8068163 (+)
G2572 NA non-coding upstream 23084 8048236 ~ 8048523 (+)
G2569 NA non-coding upstream 53699 8017443 ~ 8017908 (+)
G2566 NA non-coding upstream 93315 7977959 ~ 7978292 (+)
G2628 NA non-coding downstream 35643 8231628 ~ 8253099 (+)
G2630 NA non-coding downstream 44755 8240740 ~ 8286574 (+)
G2620 NA non-coding downstream 53527 8249512 ~ 8250570 (+)
G2631 NA non-coding downstream 55294 8251279 ~ 8288967 (+)
G2646 NA non-coding downstream 93911 8289896 ~ 8439252 (+)
G2557 NA other upstream 123354 7941547 ~ 7948253 (+)
G2530 NA other upstream 372067 7699265 ~ 7699540 (+)
G1973 NA other upstream 1537237 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 1634390 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 1668967 6385601 ~ 6402640 (+)
LOC120565323 NA other downstream 205730 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 421398 8617383 ~ 8643702 (+)
abcc10 abcc10,LOC107102248 other downstream 474186 8670171 ~ 8702455 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other downstream 695330 8891315 ~ 8911908 (+)
G3091 NA other downstream 1276115 9472100 ~ 9531976 (+)

Expression


Co-expression Network