RNA id: TU3597


Basic Information

Item Value
RNA id TU3597
length 772
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G2580
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8071607 ~ 8195985 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgattaaataaggtaatgtctccaaacttacctcaattatgacttatctcctgctagttgtactacagcacttacatttaaaaaataagcatatgcctattttttaaaatattttagtatctcttttcggtgtggtagtttgtagacggtccctaattcaattcaattcaattatattttatttatagtatcaaatcataacataagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccaacaattccagtaattccctcaagagcaagcagtgcgacagtggcgaggaaaaactccctcttgggaagaaacctcggacagacccaggctcttggtaggcggtgtctgacgagccggttgggggtgtgatgaacagtggcgataatagtcacattaataatggaacagtgactggatgtagcgggaagctgcagggttcagcaggacgcagcatgacattgcagggcatcgctgagctcagcagggagtgcagcaggaccacggcgacagctgcaaccagggtcttggtgccaacgttctccaaggaaatacgctgggggaaaaaaaagcataaggactccggggagtaaactccccagaagctaggattagtaacaagcatttctgggacgggctgcacacaaatagtaatagtaatagtaatagtaacagtaatagaaacagtaatagaaagggagaggagagagcagctcagtgtgtcaaaggaaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3595 lncRNA upstream 229 8068485 ~ 8071378 (+) True G2578
TU3596 lncRNA upstream 3444 8067263 ~ 8068163 (+) True G2579
TU3589 lncRNA upstream 23084 8048236 ~ 8048523 (+) True G2572
TU3586 lncRNA upstream 53699 8017443 ~ 8017908 (+) True G2569
TU3583 lncRNA upstream 93315 7977959 ~ 7978292 (+) True G2566
TU3633 lncRNA downstream 18273 8214193 ~ 8270545 (+) False G2598
TU3676 lncRNA downstream 35708 8231628 ~ 8253099 (+) True G2628
TU3679 lncRNA downstream 44820 8240740 ~ 8286574 (+) True G2630
TU3682 lncRNA downstream 44820 8240740 ~ 8241551 (+) False G2630
TU3625 lncRNA downstream 48376 8244296 ~ 8270545 (+) False G2598
XM_039804264.1 mRNA upstream 7107 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA upstream 7107 8052523 ~ 8064500 (+) False ccsapa
XM_039804256.1 mRNA upstream 22220 8038319 ~ 8049387 (+) True acta1a
XM_039810790.1 mRNA upstream 39743 7979869 ~ 8031864 (+) True nup133
XM_039804026.1 mRNA upstream 158546 7900622 ~ 7913061 (+) False ifngr1
XM_039800295.1 mRNA downstream 15151 8211071 ~ 8215041 (+) True LOC120558930
XM_039800189.1 mRNA downstream 176937 8372857 ~ 8380700 (+) True LOC120558872
XM_039811024.1 mRNA downstream 205795 8401715 ~ 8415076 (+) True LOC120565323
XM_039803257.1 mRNA downstream 367128 8563048 ~ 8575327 (+) True mrpl45
XM_039816351.1 mRNA downstream 421463 8617383 ~ 8643702 (+) True socs7
TU3574 other upstream 123354 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 372067 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 858051 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 858573 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 859602 7211934 ~ 7212005 (+) True trnae-uuc_47
TU3639 other downstream 213937 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 695528 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1276180 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1296389 9492309 ~ 9501129 (+) False LOC120559285
TU4435 other downstream 1575655 9771575 ~ 9772935 (+) True G3148

Expression Profile