RNA id: XM_039810790.1


Basic Information

Item Value
RNA id XM_039810790.1
length 3666
RNA type mRNA
GC content 0.61
exon number 25
gene id nup133
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7979869 ~ 8031864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTCAAGCGACTGCACCGCGCgctgtttgctgtttggtgAGGATTTTACAGTGTGGCTTGCTTGGCGGTGGTGATATTGTTTTCACGGTTACATCTCTACATATTTCTCTACCGTCGAGCAGCACGGGTTACTACAGCAGGCATGTTTTCCCCGCGCGCCGCCCCGAGCTCCGGCCGCAGGCAGCAGGGCAGGACCACCGGGAGGAAGAGCGTCTCCGGTTCGGCCACAAGTCTGCTGTTCTCCCCGCGGAGGACGCCTCTGTCGGCGAGgTCTACGCCCACCAGAGGCCAGAGCCACGGAGCTGCAGATTCACTCAACTATGACGTGCAGACCTTCGGCTCGTCGCTGCCCGTCAAAGTGATGGAGGCGCTGACGATGGCTGATGTTGAGGACCAGATCTCGGTGAAGGTGAACGAGAGCGGCTGGGCCTGGATGGTTTGTGGCGAGAGACTGATCATCTGGAAGATCTGCCAGACTGCCGTCGCCAAGCTGTCGGTGTGTAAGGAGCTGCAGCTGCCCAGCAGCGAGTACAACTACGCAGCCGACCTCGTGGCCGTGTCGTCCGCCGCTCCTCTGGAGACGGCCGCGGTGCAGTCCATCTCCGTCCTGGCCGTGTCCGTGGAGGGAACGGCCCGCTTGTGGCCCAGCCTGGCCCACGAGGGCAACTACACCGAGACCGACGTGGACCTGGGAGACCTCTGCAACTTTGTCGTTGCTGTCCGTggTGGAAGCTTCGTCTTGTCCTCGGAGAAGAATCGGCTGTTGAGAGCGAGCGTAGATTCTTCGGGGAAGCTGCAGCACCGAGCCCTGCAGCAGGGCCAGGGCGTGCTCTCCGGCATCGGGCGCCGCGTCTCCACCCTGTTCGGCATCCTCTCCCAACCTGCCAGCGACACGCTCCACAGCGTGCTGTGGGTGGGCGGAGCCGGCTGCCTCTACACGCTGACCAGCTCCAGTCTGAGTAAGTGGGAGCTGGACGACAGCTGGGAGCAGCAGATCCTCAGCTGGGACGCCCAGAGAGCTCTGACCGAGAGCATCGGCGACGCCATCTGGGGATCAGAAAGCAACTACGAGGAGCTGAAGGAGGGAGCGAAGGTGGCCTACCTGGACATGAAGCTCGGCCATGCCGGCCTGGTGGTTTTGGCTGCAGCCTGGCACCCGTCAGACGCTCCCTGCCTGGCGTACTTCTGCCTTGTCACGCTGCAGGACAACGGCGCCGCAATCTCCGACCACTTCACCGTGGAAGTCACCAAGTACAACCCTCCGTTCCAGAGCGTGGACGCGCTGCAGGCTACGCGGCTGGCGTTGCCGCTCTCTCCCGGCTCCGCCGCCTTCCTGTACAACGAGGAGATGGTGTTCGCTTGCTCCACGGGAACCAGCAGGGGAGCGCTGCCTGATGAGAAAATCAGCTTTAACTCACCGGGTGACGGTGTACGCGGCGGAGGCTGCTGCGCCGACCTGCCGGTGTTCTTCTCCCAGAACAGCGGCCTGGTGGCGGTGGTTGCCCGGGAGACCGCCTCCATCCTGCCGGAGACCATGGAGGACTCGCTGTGCTCCTCGCTGGCTCCGGAGgTTTCAGCCATGGAGACTCCGACCAGAGCTGAGCCTGTAGCTCAGGAAGACAAAACCAGACTGCTGAAGGCGGCTTTCCTGCATTTCTGTCGtAACGATCTGGTGGGCGCTCAGACGGTCACCGACGAGCTGTTCCCCGCCAACGCTGACGGGGAGGAGGGCGCCGAGCTGGACGGCCTGGTGACTCGAATCAACCTGGACCTGGTGGACGACTACCCGGCCTCCGACCCCCGCTGGGCCGAGTCGGTCCCCGACGAGAGCGGTGGCTTTCCTCTCACCTCCCTCATCATCCTCCACCAGCTGGAGGACAAGATGAAGGCCCACGGCTGCTTCATGGACTTCCTGCTTCAGGTGGGTCTGCTGGACCGGCTCGGCCAGGTGACGGTGCGGTCGTCTCCCGTGGCGACCCGCCTGCTGCTGTGCGAACACGCGGAGAAGCTTCAGGCCGCCATGGTGCTGAAGAACCACCACAGCAAACACGGCGAGCTGGTGAACCGGGCCATCGGCCTCGCGCTGCAGAAGAACGGCGCCACCGTGCCGCCCAGCCTGACGCCCGCCGACGTCTTCTTCAGAGAGGTGTCCCAGATCGCCTCTGTGTTCGAGTGTCTGCTGGACGAGGAGGAGCGGAGTCTGAAGGAGAGCCCGGTCGACTCGGTGCAGTGGGCCGAAGTCGTTCTCACCGTCAACAACGTcatcaaggacatGCTTCAGGCTGCTAGTCAGTACAGGGAGACGAAGGCCTTCATGTACAGAGCTTCTGAAACTGCTGCTGCCGAGCCGGAGTACATCCCATGGACAGCATCAGGAGGTGTTGGAGGCGTTCGCAGCGTCCTCTCCCGCCAGCACGAGATCATCCTGCGCTCTGTGTACCCGCACGCCGACTCCGAGCTGCGCAGCGCCCTTTGCGAGCAGCTGGTGGCGCTGTTGGACATCTACCTGGGCGGCTATGTGGCCCAGCTGACCTCCCTGCAGCAGCAGAGGCCCCTGGGGGCCCAACAGGAGCGCTACAACAGCCTGGAGATGGAGTACAGCCAGCGCCGCTCCGAGCTGCTCGCCCCGCTGCTGGAGCTGGGTCAGTACCAGTGGGTGGCAGCGCTGGCTGAGAAGTACTGTGACTTTGACATCCTGGTCCAGATGTGTGAGCAGACCGACAACCAGAGCCGCCTGCAGCACTACATGACCAAGTTTGCAGACCAGAACTTTGCGGACTTCCTGTTCCGCTGGTACATGGAGAAGGGGAAGAGGGGGAAGCTGCTGTCACAGCCGGCCGCCCAGCACCAGCAACTGGCCAGCTTCCTGCAGTCGCACCAGCACCTCAGCTGGCTGCACCACATCCACGTGCACGACTACCAAAGtGCCAACAGGACGCTCTACAGCCAGGCCAACGGGGAGACGCGTTACtttgtgaagaagaagacgCTCCTGGCGCTCAGTAAGCTGACGGTGCTGGCGTCCGACCTGCATGAGGACGAACTCAACAAACACGTTGACGacatcGTGGAGCAGGAGCGCTTCCTGCTGCACCAGGAGACCCTGCCCCGacagctgctggaggagaagCAGCTGAACCCTGACACCATGCCTCTGCTCAGCGCTCACAACCTCATACagtTGTACATCTGCGATGACAACAGGCGAGCCAACGAGTACGACTTCAAGAAAGCTCTGGATCTGCTGGAGTACATCGACGAGGAGGAAGCCGAGGACATCGACTCGCTGAAGTGTGAGATCTTCGGCAAAGCGCTCAGGAGAGACGACTGGTCCTCCACTGACGGGACGGACGACCCCCTGGAAGCCGCCAAGGACAGCATCTTCGTCAAGATCCTCCTCAAACTCATCCAGGAAGGAGTTTCTCTGCAGACGTACCTGCCTGACGTCAAAGAGCTGCTGGAGCTGGAGGATCTGAGCGGTTTGAAATCGAAACCTTATTTTGAATTTGTCCTTCGAGCCAATTATGAACATTACCTAGAAGCCCAGATGTGACGACCGCTGACCTCCCAGTAACGCCTGCTACTGCACTTGTAATAATTTTCAAGCTTTGTTTGAAACATGctcttttctaaataaatgtgttttggttATTTCTGTACTGAA

Function

GO: NA

KEGG:

id description
K14300 NUP133; nuclear pore complex protein Nup133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3583 lncRNA upstream 1577 7977959 ~ 7978292 (+) True G2566
TU3582 lncRNA upstream 3372 7976161 ~ 7976497 (+) True G2565
TU3581 lncRNA upstream 3988 7975669 ~ 7975881 (+) True G2564
TU3579 lncRNA upstream 4835 7974273 ~ 7975034 (+) True G2562
TU3580 lncRNA upstream 8646 7970789 ~ 7971223 (+) True G2563
TU3589 lncRNA downstream 16372 8048236 ~ 8048523 (+) True G2572
TU3591 lncRNA downstream 23635 8055499 ~ 8078861 (+) True G2574
TU3596 lncRNA downstream 35399 8067263 ~ 8068163 (+) True G2579
TU3595 lncRNA downstream 36621 8068485 ~ 8071378 (+) True G2578
TU3597 lncRNA downstream 39743 8071607 ~ 8195920 (+) False G2580
XM_039804030.1 mRNA upstream 66719 7900622 ~ 7913150 (+) True ifngr1
XM_039804026.1 mRNA upstream 66808 7900622 ~ 7913061 (+) False ifngr1
XM_039810942.1 mRNA upstream 91495 7876002 ~ 7888374 (+) True LOC120565283
XM_039805410.1 mRNA upstream 106269 7866252 ~ 7873600 (+) True LOC120562006
XM_039810834.1 mRNA upstream 146362 7827589 ~ 7833507 (+) True LOC120565228
XM_039804256.1 mRNA downstream 6455 8038319 ~ 8049387 (+) True acta1a
XM_039804264.1 mRNA downstream 20659 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA downstream 20659 8052523 ~ 8064500 (+) False ccsapa
XM_039800252.1 mRNA downstream 77479 8109343 ~ 8115194 (+) True LOC120558905
XM_039800295.1 mRNA downstream 179207 8211071 ~ 8215041 (+) True LOC120558930
TU3574 other upstream 31616 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 280329 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 766313 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 766835 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 767864 7211934 ~ 7212005 (+) True trnae-uuc_47
TU3609 other downstream 57949 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 377993 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 859584 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1440236 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1460445 9492309 ~ 9501129 (+) False LOC120559285

Expression Profile