RNA id: TU3595


Basic Information

Item Value
RNA id TU3595
length 2873
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2578
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8068485 ~ 8071378 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtagaaataaatagacataaacaggcaacgtaaagtaacctagatagctaacgtcaacgttaggtagccgctagcaaacgctagctagaagggtttgtggtgactttgcctggaaagCTACcgagtcgtgagtcgtgacttgaagccgtaacttacgggctaaaaactgtgtctggaacgcagcatcagTTACAGGTTTGACTGACACTTTCACCGATAGACGGtcgtgaaaacacgagttacgggctgcctggaacgcagcgttacttgccccgggccatcgggcgaACCCTTAATGTTGAACCCTGTGATGGACTGAAATAGTGTGTTGATGTATAAACTGTTTGATAATGAACAGATTAGAGAGAATTATGTCTTTCTaagctcttattttgaaaagaaaagaaaaaacacaaagtcGAATCACTCtttgaatgtattttatttctgaGCATGAAACTGCAGAAAACGGACCAAACTGGAGTATTTTTGATATTTGACTGTTTTGAAACTCAAGTTTAGATTAGAagaaactacatagaaacaaaGAGATTtatcaaataaaatgaatacTTAAAAGTATTTTCTGAGTAGAAACTATATTTAAAGTGCGCTACCTTTTTATGATAATCTCagtttcatgtttgtttttcttcgaGATGCAGCTTCTTGGTTtacgttgattttaaaatgaggAATAATCTGCAACGCCAACCTGATTTCTAAATATTCTGAATTCACCTGTAGGACCAAAAGAATCCAAATAGATTCAGTAACAAGAGGATGTGAGCTAAGCTTTCTTGGGGGGTGAATAtgcaaaagtaaaagttttaaataatCCCTTTTGTGAGATTAATTTAAATACAACACTATAGTATTGTTAATTTATGTTTCTTAAGACAGCTGAAGCTCGTTTGCTTGATCAGAAATCCAGTTTTCTGGAGTAAAGACCGCCTTCTCCAACGTCGTAAAGGATCCGATACACTTTTTATGAAACTAAACATTAATATTCAAGAGCAGAGGCACAATTTCAAGCTTAAAGCGTGATGCATTTAACAAGTGTGGGAATGTTTAAAGCTGTCATCAGCTAACTAAACTGATCACAAGACAAGTTTAGTCAGGATTGGCGCGGTTTACCTCCTCAGTCGTATCCGCCACGctacacttccgggattgctccggtgccgctggaaataccaccggatgtccgttaacttcctctttctttgtgttgccgttgtaaactccggtggatttaggAGGacaaaggtgccgtaggtagaactggaagatccaggacttagcctaaaaatgtgaacatcaacaacttctcagtccctccccgcTTTCctctaaagcccaaaacggtctcctaagcccctccccccacaagggagaatgaatgcgtgtgcgtgagcagtgattgacacgcagtcagacacacacacccccctcccccctccaccccctggccctgattggtgcatctgaacagggatctgtggatttttgcaaatcacactacaggctgtaggtggtgactgaggagccagatattttctttaaatgacctgcttcatgtagttctactggaacatagggtcagtttcagcaaatatgacagaaagttagttttataagtcttacctactgcaccttttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatctgagttttctgttgcacgactaaaaacaacctttaaacgtacacacgttcaccaaaacaagttccttcccgaggcgattttgcagcggcaccgtgactccgtccggcgcttcgcaccgcccaagacgattgtgattggtttaaagacatgccaataaaccagagcgcgtttttctcccatcccggaaggtctggcaatgcgagacgaCTGCCTCAGTAACACTTTCCCAGTTCGCCAATTCTTTTCTTGTTTTCAGTCCTAATAAACTCAACAAGGGACGACCCCGCACTCCTTCGGTTCCTCTGGACCTTCGTCAAGAGTAGTAAGGGGGCCGTAACGTTAGTTTCTTTAATAAATTGTGATGCTGAGCAAAGAGCAGAGTGCGGGATCTTTCCTTTTTCAAGTCTGCGATATTTTCCAACGCACCTGCATCCAGGAATTGTTGGACGTGCACATTTTTTCTTCGTACAGTTCTAATAAACAaaattttaaacatttgtaaacaaattaagtCCTTGAACGTCAGTGTCTGTAATTTCCTAGGAGACAACGTAATCTGTAATACAGTAAATACGCAACAAGTATTTACTTGAGTTTAAATGGAACTGTATCAATAATTACTCCAAAAAGaaaatttattgtgaattattttcacattttcctGCTCGAAACCTTGAAAATCAGTTTGTGGTTTATGTCCAACGGGACAGGATGTAAAAGGGAATGTTTACATCCAATGAAGTAttcattttaatacattttaatacatttcaaCATCATGTAGCGCCTCTGTTTCCATCAAATCAAACCGATAAGACTCGTATCGTAAAGTGTAGAAACGTTTGACCGTGTggatgtgtctctctgtttttctgacCGTTTGATGTAACTGAAGATTGTAAATACACGTTGATGTCATCGTCGCGTCACCGTGACTCAAACTGAGGGCTAACGTTCATCGTGTATTCTCATTCACATGAACATTACGtgagtttacttttaaaactgAATGCACGTACATTCACTGAGAATGTTTTGCTGATTTTTAACGCCGGCTGAAGCTCGTCACTCTACCTAGTTGGCCCTACACGGTTGGTTCCTAATAAGTCTAATTCATTCTGTGAATAtggctgcagtagatgtgaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3596 lncRNA upstream 322 8067263 ~ 8068163 (+) True G2579
TU3589 lncRNA upstream 19962 8048236 ~ 8048523 (+) True G2572
TU3586 lncRNA upstream 50577 8017443 ~ 8017908 (+) True G2569
TU3583 lncRNA upstream 90193 7977959 ~ 7978292 (+) True G2566
TU3582 lncRNA upstream 91988 7976161 ~ 7976497 (+) True G2565
TU3597 lncRNA downstream 229 8071607 ~ 8195920 (+) False G2580
TU3598 lncRNA downstream 229 8071607 ~ 8195985 (+) True G2580
TU3601 lncRNA downstream 7847 8079225 ~ 8081486 (+) True G2582
TU3615 lncRNA downstream 27649 8099027 ~ 8104938 (+) True G2595
TU3616 lncRNA downstream 27649 8099027 ~ 8325259 (+) False G2595
XM_039804264.1 mRNA upstream 3985 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA upstream 3985 8052523 ~ 8064500 (+) False ccsapa
XM_039804256.1 mRNA upstream 19098 8038319 ~ 8049387 (+) True acta1a
XM_039810790.1 mRNA upstream 36621 7979869 ~ 8031864 (+) True nup133
XM_039804026.1 mRNA upstream 155424 7900622 ~ 7913061 (+) False ifngr1
XM_039800252.1 mRNA downstream 37965 8109343 ~ 8115194 (+) True LOC120558905
XM_039800295.1 mRNA downstream 139693 8211071 ~ 8215041 (+) True LOC120558930
XM_039800189.1 mRNA downstream 301479 8372857 ~ 8380700 (+) True LOC120558872
XM_039811024.1 mRNA downstream 330337 8401715 ~ 8415076 (+) True LOC120565323
XM_039803257.1 mRNA downstream 491670 8563048 ~ 8575327 (+) True mrpl45
TU3574 other upstream 120232 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 368945 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 854929 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 855451 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 856480 7211934 ~ 7212005 (+) True trnae-uuc_47
TU3609 other downstream 18435 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 338479 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 820070 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1400722 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1420931 9492309 ~ 9501129 (+) False LOC120559285

Expression Profile