RNA id: TU3583


Basic Information

Item Value
RNA id TU3583
length 334
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2566
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7977959 ~ 7978292 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtggcaatactgtatcgatacacagacgccaagtatcgatcttttatgatatatgtgttggtcagtctgtctgcttgacaatccccattttgcagcaataaaactgaagtgagatgaacaaacagagaaatgtgtctttttagataaaacagatgttgaccaaattgtcctttggggacatcatttgaaattgggaaaaatctgaagttggaaaaaaggtaatacattgcaatatattgcagaatattgcaatatgtttaaaatcgcaataatatcgtatcgtgacataagtatcgggatgatatcgtatcgtgagacctctggtgattccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3582 lncRNA upstream 1462 7976161 ~ 7976497 (+) True G2565
TU3581 lncRNA upstream 2078 7975669 ~ 7975881 (+) True G2564
TU3579 lncRNA upstream 2925 7974273 ~ 7975034 (+) True G2562
TU3580 lncRNA upstream 6736 7970789 ~ 7971223 (+) True G2563
TU3578 lncRNA upstream 12683 7963257 ~ 7965276 (+) True G2561
TU3586 lncRNA downstream 39151 8017443 ~ 8017908 (+) True G2569
TU3589 lncRNA downstream 69944 8048236 ~ 8048523 (+) True G2572
TU3591 lncRNA downstream 77207 8055499 ~ 8078861 (+) True G2574
TU3596 lncRNA downstream 88971 8067263 ~ 8068163 (+) True G2579
TU3595 lncRNA downstream 90193 8068485 ~ 8071378 (+) True G2578
XM_039804030.1 mRNA upstream 64809 7900622 ~ 7913150 (+) True ifngr1
XM_039804026.1 mRNA upstream 64898 7900622 ~ 7913061 (+) False ifngr1
XM_039810942.1 mRNA upstream 89585 7876002 ~ 7888374 (+) True LOC120565283
XM_039805410.1 mRNA upstream 104359 7866252 ~ 7873600 (+) True LOC120562006
XM_039810834.1 mRNA upstream 144452 7827589 ~ 7833507 (+) True LOC120565228
XM_039810790.1 mRNA downstream 1577 7979869 ~ 8031864 (+) True nup133
XM_039804256.1 mRNA downstream 60027 8038319 ~ 8049387 (+) True acta1a
XM_039804264.1 mRNA downstream 74231 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA downstream 74231 8052523 ~ 8064500 (+) False ccsapa
XM_039800252.1 mRNA downstream 131051 8109343 ~ 8115194 (+) True LOC120558905
TU3574 other upstream 29706 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 278419 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 764403 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 764925 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 765954 7211934 ~ 7212005 (+) True trnae-uuc_47
TU3609 other downstream 111521 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 431565 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 913156 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1493808 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1514017 9492309 ~ 9501129 (+) False LOC120559285

Expression Profile