RNA id: TU3580


Basic Information

Item Value
RNA id TU3580
length 435
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2563
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7970789 ~ 7971223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgacgtcacagtccgaaatgagctggctaaccacaaccgttagctcgtagcgttagccggctaacgctaacgctagcatgctacgtcgttctcaatagcaaagcactgctacaacacacacaagttcaccataatctacaaaagaactacttacatgtgcgccctcatttagaagtctcccagctaatcctgccttggaactgaccaaagttggagaaacaggctttcttttactgtctctagagttagctagctgacatgatctacatctgagctactgagcatgtgcgagtgcaatcaaagatagtacagaagaagaagatgaaaagaggtctcactctgtagctaaaacagagaccaggtgaaaagaggatctgcagcagtgagagagagctgtgcagtacaacaaaaatatggtattttttgaaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3578 lncRNA upstream 5513 7963257 ~ 7965276 (+) True G2561
TU3558 lncRNA upstream 53208 7913752 ~ 7917581 (+) True G2545
TU3545 lncRNA upstream 162425 7752713 ~ 7808364 (+) True G2534
XR_005639929.1 lncRNA upstream 195863 7770713 ~ 7774926 (+) True LOC120563307
TU3525 lncRNA upstream 310694 7659400 ~ 7660095 (+) True G2524
TU3579 lncRNA downstream 3050 7974273 ~ 7975034 (+) True G2562
TU3581 lncRNA downstream 4446 7975669 ~ 7975881 (+) True G2564
TU3582 lncRNA downstream 4938 7976161 ~ 7976497 (+) True G2565
TU3583 lncRNA downstream 6736 7977959 ~ 7978292 (+) True G2566
TU3586 lncRNA downstream 46220 8017443 ~ 8017908 (+) True G2569
XM_039804030.1 mRNA upstream 57639 7900622 ~ 7913150 (+) True ifngr1
XM_039804026.1 mRNA upstream 57728 7900622 ~ 7913061 (+) False ifngr1
XM_039810942.1 mRNA upstream 82415 7876002 ~ 7888374 (+) True LOC120565283
XM_039805410.1 mRNA upstream 97189 7866252 ~ 7873600 (+) True LOC120562006
XM_039810834.1 mRNA upstream 137282 7827589 ~ 7833507 (+) True LOC120565228
XM_039810790.1 mRNA downstream 8646 7979869 ~ 8031864 (+) True nup133
XM_039804256.1 mRNA downstream 67096 8038319 ~ 8049387 (+) True acta1a
XM_039804264.1 mRNA downstream 81300 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA downstream 81300 8052523 ~ 8064500 (+) False ccsapa
XM_039800252.1 mRNA downstream 138120 8109343 ~ 8115194 (+) True LOC120558905
TU3574 other upstream 22536 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 271249 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 757233 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 757755 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 758784 7211934 ~ 7212005 (+) True trnae-uuc_47
TU3609 other downstream 118590 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 438634 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 920225 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1500877 9472100 ~ 9527214 (+) False G3091
TU4305 other downstream 1521086 9492309 ~ 9501129 (+) False LOC120559285

Expression Profile