RNA id: TU3558


Basic Information

Item Value
RNA id TU3558
length 2634
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2545
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7913752 ~ 7917581 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATTCTTCTCTCTAAAATCAAAGAGCTGCAACCCAAAGAGGATTAAAAAGACTTCATATGCCGCCTGAACAATGCAGGGAAACATTTTTGGAGTACGTGCTTTTCAACAATATGAAACCTCAGCCTCTTTTTAAACCCGTTTTTAACATTCTTCAACGCTGCTTGTGCTGTTTGACTGTGCCGTGCCGGCGGAAAACAAACCGGTGATCTTCCAGTCCCAACCCTCAGCCGGCCTCGGCCCCTGTGGCATCTTATCAGATGCTGCAGTAGAGAACGGTTACTTCAAAAGGCAACCGGGTAGTTTTTATCTCAAGGAAACAAGCACATCCTAAAGAACATATCAAAAGGTGTACTGTATAAGCTCTTTGTTGTCTTTTAGTATCGGCTAAAACCGGTGTTTTATATGTGCAGCGGTTTTTCATGAATGGAAAGGGCTCCAtgtcttgttgttttttaattattttttaaatctttgccagcatttactgttttgttttaaaaaaggcaGAGTTCAACCAGATGACACAAAAAAATGCATGTTCTCACTTGCATCAAGTATTATCTAATCATGGCAATAGTTTGTGCAGAGGTTTGGTTTAGGATTTCTGCCACACCATTCCAATAAAATGAGGGTGAATTTAAtcactttattttaaaagtaatgTCCACACATAATCCACAGAACACACTGCCAGTTTTCCCATGGAAAATGTCTTCAGTAGAAAGAAGTTCTAATGAAAACCATTCATGGCAAAGGTTTTGTGTATTGTCCAGAGCAAACCGGAGAAATGTATTTTTGCAAGGAGagatgtaattttgtttttagcATTTTGAGTTCCACTAACAGAATTCCATCCAATTAAGTACCACTTAAAAAGGTAAATaagaatattttctttttttctttttgtcatttaagTGAAAGTCTCACTGGTCGCTCTGACCAAACTTAAGGCTTTTGATTTAAATTTTGGAAGTTAAACAGAGCACCTTCCATATAATGTGGACTTTCCCCTGTATTGCAGCAGGTTAGCAgaagtggtgtagtctacgtgatatgcAGGTATACCCGGTAAGAAAGCTCCAGCATTTCCACATAACCCACTTAAAAGATGTGCAATGATACGCAACGACATTGTTTTGGGGCAAAACGCTTTTGGCTCCTGCAGAGAGCCTAGTGTAGGATACCCACTATAATACACCCACTGCTTATCAGAGGTTATAAATACCTTTTCAGCCTCGCCAACAGTGCCACTCCTTTATTAAAGCCTGCAGATCCGGTCGTGAAGGTGacgtgtttatttatttttttgcatcacATTTGCATTGCGTTTGTTTACATTACTTTaaccttgtttgtttttgctaatGAGATTGTAATTAATATTCATTTTACAGTAATTTGCTTTCAGGGTTAAACAACGAAGCCATATCTATTTTTTTAAGAGTATGAATGCTGTGCTTCTAATGAGACGTGATTGTATTTAAGGTCAGGTAACCATGATGCTCGTTCGGGTGCGAGGGAAGAATGTCGTCTTGCTGCTTTGACAAAGATTGTGTGACGGATAATTATCCGCTCGCCTGGTGGGGGAAAAGTGCAGTTTGATGAGCTCTAAATGAAATCTCAAAGAaattgcatttaaatgtttttttaataaagagACAAACAATATTGATCTTTTCTTTCCAAATATAAAGAAGTGTTTGTACGGCTGGGTCTCAATGGATATCTTAAGATACAAATACCGATACCCTTTTTATGAGGAATATGTTTTCCAACAAAATATGCTTTCTGGTGAAGAGTTGAATGGGAGTGGTATCGATCCTCTCGTCTAACTCTCTGCAATAAAGCGTACTACTCAAAACACCAGATAAGATGTGATCAGAGGATGAGTAAACGAGATCACCAATAGGAAAAGATGTGCAAAACTAACTTTTGGCTCATTGGTTTTTAATACTCCTACTCAATACCAAGCCTTTGGTATTCCTGGATTTCAACCTGCTGTAACATGATGACAAGACCTGGTTTACTGTAAATAGGTAGTTTTTGCTCCTTTTTATTAAATGAACTATGTGGTGATGATATGAGAGAACCCGAGCCTCTCAGCACCCCGTCCGTCCTCCTTTGTTTGGCTCCACTGAGGCGAACGGCGGCGTGTCCGCTGGTGACGCACACGCCACCAAAGGGTAAAAAGTCTGTGCAGGCAGTTTGTTGCTAAAGCTTCAGGCCTTGAACGTTTGTTCTCAGGTTCAACATCTGCTTCTCCTGGCGGACTTTTTCTTCCTTGAACGCCATCTTGTTGGCTTTCTTCTCCACTCTCCGCTCCTTGCGTTCTTCCTTGATGGCCTGTTTCCTggccttcctctcctctttgctCTCCTCCTTGTCGCGGTGCTGGGTGGAGACTCGGGGCAGGTCCGAGTCGTTGATCCGAGTCATGCGCTCCGCCTGCTTGGCGGTCAGGCCTTTGGCAGGAAGGACGTCCAGAGGGATGCCCGTCTTACTGGACACGCGGATCGGCTTGGTCTGGCGACagaaggaaacaaaaaaagagagaagggtTGATTCAAGACTTGTTTGTAGTCAGTGTGCGTTATCGCTCACATGTGTCACATCTAAAAGAACACAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3545 lncRNA upstream 105388 7752713 ~ 7808364 (+) True G2534
XR_005639929.1 lncRNA upstream 138826 7770713 ~ 7774926 (+) True LOC120563307
TU3525 lncRNA upstream 253657 7659400 ~ 7660095 (+) True G2524
TU3524 lncRNA upstream 254729 7658404 ~ 7659023 (+) True G2523
TU3510 lncRNA upstream 310161 7602033 ~ 7603591 (+) True G2512
TU3578 lncRNA downstream 45676 7963257 ~ 7965276 (+) True G2561
TU3580 lncRNA downstream 53208 7970789 ~ 7971223 (+) True G2563
TU3579 lncRNA downstream 56692 7974273 ~ 7975034 (+) True G2562
TU3581 lncRNA downstream 58088 7975669 ~ 7975881 (+) True G2564
TU3582 lncRNA downstream 58580 7976161 ~ 7976497 (+) True G2565
XM_039804030.1 mRNA upstream 602 7900622 ~ 7913150 (+) True ifngr1
XM_039804026.1 mRNA upstream 691 7900622 ~ 7913061 (+) False ifngr1
XM_039810942.1 mRNA upstream 25378 7876002 ~ 7888374 (+) True LOC120565283
XM_039805410.1 mRNA upstream 40152 7866252 ~ 7873600 (+) True LOC120562006
XM_039810834.1 mRNA upstream 80245 7827589 ~ 7833507 (+) True LOC120565228
XM_039810790.1 mRNA downstream 62288 7979869 ~ 8031864 (+) True nup133
XM_039804256.1 mRNA downstream 120738 8038319 ~ 8049387 (+) True acta1a
XM_039804264.1 mRNA downstream 134942 8052523 ~ 8064500 (+) True ccsapa
XM_039804272.1 mRNA downstream 134942 8052523 ~ 8064500 (+) False ccsapa
XM_039800252.1 mRNA downstream 191762 8109343 ~ 8115194 (+) True LOC120558905
TU3532 other upstream 214212 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 700196 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 700718 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 701747 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 704310 7209371 ~ 7209442 (+) True trnae-uuc_46
TU3574 other downstream 23966 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 172232 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 492276 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 973867 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1554519 9472100 ~ 9527214 (+) False G3091

Expression Profile