RNA id: TU3510


Basic Information

Item Value
RNA id TU3510
length 562
lncRNA type inter_gene
GC content 0.56
exon number 3
gene id G2512
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7602033 ~ 7603591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGagtgtcaacaaaaaaaaagaagcctttttattaaattatgcAACGTAACAACTACAGCGGAAATCTGAACAGACCGACGTTGACAGAGTCCTCTGATCCCTCGCAGTACGAGCAGGCTTAGTGGACAGAACTCACGGGACAGACTCAATTTATCGGGTGTTCACCACGTCGTCGATCTTGAGGATGCTGCGAACCGTCTCTGTGGAAAGGGTCAGAGCACTGATGGAGACCAGTAGAGGCTGCACCACCAGCTCCTCCAGGATGTTGGAGATTCCtccCTTGCGGACGTTGATGCCGGCCATCTTGTCTCCCTGAGCGTGCCTGTTGCGGAGCTCCGTCACCGTGGAGATGGGGTTCAGGCCGGCGTTCTCAGCCAGCGTCGAGGGGATCACCTCGAGGGCGTCGGCGTACGCCCGCACGCAGTAGGCCTCCATGCCGGCCAGAGTGCGCGAGTACTCCGCCAGACGCACGGCCAGCTCGATCTCTGGAGCGCCGCCACCAGCTATCAGAGCCctgaggggaggaggaggtagGAGAAGGAAGAAAGGTTATCGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3497 lncRNA upstream 10957 7588643 ~ 7591076 (+) True G2505
TU3471 lncRNA upstream 44592 7554040 ~ 7557441 (+) True G2486
TU3407 lncRNA upstream 216680 7385132 ~ 7385353 (+) True G2428
TU3351 lncRNA upstream 358561 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA upstream 358561 7241821 ~ 7243472 (+) False G2386
TU3524 lncRNA downstream 54813 7658404 ~ 7659023 (+) True G2523
TU3525 lncRNA downstream 55809 7659400 ~ 7660095 (+) True G2524
TU3545 lncRNA downstream 149122 7752713 ~ 7808364 (+) True G2534
XR_005639929.1 lncRNA downstream 167122 7770713 ~ 7774926 (+) True LOC120563307
TU3558 lncRNA downstream 310161 7913752 ~ 7917581 (+) True G2545
XM_039815515.1 mRNA upstream 164775 7390099 ~ 7437258 (+) True LOC120568176
XM_039810376.1 mRNA upstream 362440 7238071 ~ 7239593 (+) True LOC120565053
XM_039810088.1 mRNA upstream 838236 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 838236 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 879075 6695584 ~ 6722958 (+) True LOC120564833
XM_039819062.1 mRNA downstream 9332 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 89994 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 115365 7718956 ~ 7743994 (+) True LOC120563246
XM_039807380.1 mRNA downstream 115365 7718956 ~ 7726536 (+) False LOC120563246
XM_039807382.1 mRNA downstream 115365 7718956 ~ 7726536 (+) False LOC120563246
unassigned_transcript_51 other upstream 388477 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 388999 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 390028 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 392591 7209371 ~ 7209442 (+) True trnae-uuc_46
unassigned_transcript_47 other upstream 393103 7208859 ~ 7208930 (+) True trnae-uuc_45
TU3532 other downstream 95674 7699265 ~ 7699540 (+) True G2530
TU3574 other downstream 337956 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 486222 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 806266 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 1287857 8891448 ~ 8893493 (+) False zbtb45

Expression Profile