trnae-uuc_45


Basic Information

Item Value
gene id trnae-uuc_45
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7208859 ~ 7208930 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_47
TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCCGGGTTCAACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_47 True 72 tRNA 0.45 1 7208859 7208930

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_44 NA coding upstream 1466 7207322 ~ 7207393 (+)
trnae-uuc_43 NA coding upstream 1973 7206815 ~ 7206886 (+)
trnae-uuc_42 NA coding upstream 3512 7205276 ~ 7205347 (+)
trnae-uuc_41 NA coding upstream 4492 7204296 ~ 7204367 (+)
trnae-uuc_40 NA coding upstream 6035 7202753 ~ 7202824 (+)
trnae-uuc_46 NA coding downstream 441 7209371 ~ 7209442 (+)
trnae-uuc_47 NA coding downstream 3004 7211934 ~ 7212005 (+)
trnae-uuc_48 NA coding downstream 4033 7212963 ~ 7213034 (+)
trnae-uuc_49 NA coding downstream 4555 7213485 ~ 7213556 (+)
LOC120565053 NA coding downstream 29141 7238071 ~ 7239593 (+)
G2374 NA non-coding upstream 60375 7147274 ~ 7148484 (+)
G2361 NA non-coding upstream 122600 7085736 ~ 7086259 (+)
G2355 NA non-coding upstream 153052 7055267 ~ 7055807 (+)
LOC120562278 NA non-coding upstream 179737 7026754 ~ 7029122 (+)
G2335 NA non-coding upstream 250529 6957681 ~ 6958330 (+)
G2386 NA non-coding downstream 32891 7241821 ~ 7243472 (+)
G2428 NA non-coding downstream 176202 7385132 ~ 7385353 (+)
G2486 NA non-coding downstream 345110 7554040 ~ 7557441 (+)
G2505 fam161a,LOC102790424 non-coding downstream 379713 7588643 ~ 7591076 (+)
G2512 cct4,LOC102790717,LOC104959023 non-coding downstream 393103 7602033 ~ 7603591 (+)
G1973 NA other upstream 674489 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 771642 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 806219 6385601 ~ 6402640 (+)
snrpb2 snrpb2 other upstream 1292485 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 1737450 5387393 ~ 5471409 (+)
G2530 NA other downstream 490335 7699265 ~ 7699540 (+)
G2557 NA other downstream 732617 7941547 ~ 7948253 (+)
G2590 NA other downstream 880883 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 1192785 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 1408453 8617383 ~ 8643702 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnae-uuc_15 NA coding NC_047613.1 CM018559.1 20421855 ~ 20421926 (-)
mexican tetra (Astyanax mexicanus) trnae-uuc_15 NA misc NC_035899.1 CM008302.1 53639368 ~ 53639439 (+)