RNA id: XM_039810088.1


Basic Information

Item Value
RNA id XM_039810088.1
length 1889
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC120564849
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6727928 ~ 6763797 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCGGAGGCTGTCAGCTTTAAGAAGCTAACAGCGACAGCAGGAGGATTGAAGCTGCGCTTTCCAACCGTTTAACTCgactttttgtgtgtaaaacGGAGTCCTCCGGGTCCGAACGGTAGTCTGTCCCGGTCTGACGTTGTCCCGAGGatctcccggtaacgttagttACGTTACTTTGACTGACAGAGTGCTCAGacctGACCCGCGGAGCGATGACTGAGTTCCAGGAGAAGCTGCGTCAGCAGCACGAGGAGTCGATGCACCGCGAGCTGGAGGCGCTGCTCGCCACCGCCAACCAGGCCGAGGCTCAGaTCTCCAGAAAAGATTTCGATGGCTTCAAGAAGATCTTCCACAGATTCCTGCAGGTCAAAGGTCCGGCAGTCGACTGGGCCAAGATCAACCGGCCGCCGGAGGACTCGATCCAGCCCTATGAAAAGATCAAGATGAAGGGTCTTCCTGAAAACATCGCCGCCAGTCTCAACAAGCTCGCTGTGGTCAAACTGAACGGCGGTCTGGGAACCAGTATGGGCTGTAAGGGCCCCAAGAGTCTGATCAGCGTCCGCAACGAGAACACCTTCCTGGACCTGACCGTCCAGCAGATCGAGcaTCTGAACAAAACCTTTAACGCCGACGTGCCGCTGGTCCTCATGAACTCCTTCAACACCGACGAGGACACGAAGAAGATCCTGCAGAAATACAAACACCACCGCGTCAAGATCCACACCTTCAACCAGAGCAGGTATCCAAGGATCAACAAAGAGTCGCTGCTGCCGATTGCCAAAAACATGGGGATGAACGGCGAGAACGGCGAGGCGTGGTACCCCCCGGGGCACGGAGACGTCTACGCCAGCTTCGCCAACTGCGGCCTGCTGGACCGACTGCTCGCCGAGGGCAAGGAGTACATCTTCGTGTCCAACATCGACAACCTGGGCGCCACCGTCGACCTCTTCATTCTGCAGCACCTGATGAGCCAGCCGGCCGACCGGCGCTGCGAGTTCATCATGGAGGTCACCGACAAAACCAGAGCGGACGTCAAGGGTGGGACGCTGATCCAGTACGAGAATCACCTGAGGCTGCTGGAGATCGCGCAGGTGCCGAAGGCCCACGTCGACGAGTTCAAGTCCGTCACCAAGTTCAAGATCTTCAACACCAACAACCTGTGGATCTCTCTGCCCGCCATCAAGAGGCTGCAGGACGAGAACGCCATGGAGCTGGAGATCATCGTCAACCCAAAGACGCTGGACGGCGGTCTGAACGTCATCCAGCTGGAGACGGCCGTGGGCGCCGCCATCAAGAGCTTCAACAACGCGCTGGGTGTGAACGTCCCGCGCAGCCGCTTTCTGCCGGTGAAGACGTCGTCCGACCTGCTGCTGGTGATGTCCAACCTGTACAGCCTGGACGCCGGCTCGCTCACCATGAGCAAGAAGAGGGAGTTCCCCACCACGCCGCACGTCAAGCTGGGCAGCTCCTTCACCAAGgttCAGGAGTTTCTGTCCAGGTTCGAGAGCATCCCGGACATGTTGGAGCTGGACCACCTCACCGTGTCGGGAGACGTCACCTTTGGGAAGAACGTCTCTCTGAAGGGAACCGTCATCATCATAGCCAATCACGGTGACCGGATCGATATTCCCGCCGGAGCGATGCTGGAGAACAAGATTGTTTCAGGAAACCTGCGGATCCTCGACCACTGAGGCCTTCTGGGGAGAAAAAAAcctacaacacacaacacaaacaagccATTTGCACCTTGAAGAGACTCAAAGAGAGATGATTTCCCTTCACTGATGAACTGTCACAACACTGTTTGTTTTTATCAGCCTGATCACGTCCGAGCCcactgtggttgttgttttctGCTGTCTAATAAAGAAGTGCGATATGGGTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3178 lncRNA upstream 3244 6724440 ~ 6724684 (+) True G2260
TU3174 lncRNA upstream 33717 6693912 ~ 6694211 (+) True G2258
TU3173 lncRNA upstream 35557 6692141 ~ 6692371 (+) True G2257
TU3148 lncRNA upstream 95859 6631673 ~ 6632069 (+) True G2241
TU3135 lncRNA upstream 145494 6582125 ~ 6582434 (+) True G2230
TU3182 lncRNA downstream 7558 6771355 ~ 6775250 (+) True G2263
TU3188 lncRNA downstream 11025 6774822 ~ 6782912 (+) True G2268
TU3192 lncRNA downstream 44007 6807804 ~ 6808666 (+) True G2272
TU3194 lncRNA downstream 46953 6810750 ~ 6811453 (+) True G2274
TU3196 lncRNA downstream 51211 6815008 ~ 6815992 (+) True G2276
XM_039810077.1 mRNA upstream 4970 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 68609 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 198980 6510225 ~ 6528948 (+) True LOC120565047
XM_039810208.1 mRNA upstream 290711 6407400 ~ 6437217 (+) True aftpha
XM_039823263.1 mRNA upstream 326110 6389295 ~ 6401818 (+) False LOC120573424
XM_039810376.1 mRNA downstream 474274 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 626302 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 849126 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 929788 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 955159 7718956 ~ 7743994 (+) True LOC120563246
TU2759 other upstream 193558 6532441 ~ 6534370 (+) True G1973
TU2728 other upstream 291064 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 291064 6428831 ~ 6436864 (+) False aftpha
XR_005641746.1 other upstream 325888 6385602 ~ 6402040 (+) False LOC120573424
XR_005640968.1 other downstream 33669 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 34693 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 35778 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 37605 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 38208 6802005 ~ 6802119 (+) True LOC120569727

Expression Profile