RNA id: TU2759


Basic Information

Item Value
RNA id TU2759
length 1782
RNA type TUCP
GC content 0.43
exon number 2
gene id G1973
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6532441 ~ 6534370 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattacattatgtgcttacataattgcaaaagggttctcgactgttcaAGAAACGCTTGAAAtccatgctttttggtctaaacgtcGTACcaaaattaaaagtggtacagctcccatatactttgacattctgggtggaatggaaatttgtaagtgaccccaaacttttgaccggtagtgtatgtatatacacCAATCGCAAACTGTCAATCGTGACATTTTAGCCCCATTTTTATAGCATTAGGTAACTAATACAAATCAAACACTTGAACAAAACGTGTAAATCAGAACTACCTGAAAAGACACAAACGATCTTTTGGGAAatgggatgcaccgaatccagattttggGGATTTCGGCCAAATACCGAATCCTctggttgagattgtgctgactcctcctcccatcctcagtccatgaacccagtaaacacatgaatgaagtaaacagggactgtccttcctttgccgtacctgaagttgctgcattctggctgctgtctggagattccttcatgcacaactcgtattctttcagatgtttcagaccagatgtaacagcggccatgttgtgtatagtttagggtcctcgccaccaccaaaccaatcagcattgaacagattgaacatgtagctggacttgaatggccttcttttgactgaaagtactgccaaacaataacttgttctgctcaccagatccatgtccacttcctcacagcctactgctcacctgatccatgtccacttcctcacagcctactgctcaccagatccatgtccacttcttcacagcctactgctcaccagatccatgtccacttcctcacagcctgctgctcaccagatccatgtccacttcctcacagcctgctgctcaccagatccatgtccacttcctcacagcctactgctcaccagatccatgtccacttcctcacagcctactgctcaccagatccatgtccacttcctcacagcctactgctcaccagatccatgtccactttctcacagcctgctgctcaccagatccatgtccatttcctcacagcctgctgcattgaacgctccacctacgtaaacaccttcccgtaatcaccGGCACCGTCACTACGGCGACCAGCATAGCGCGcctagtgcaagcgtagggttcggttcgctgGGAAAAAATTCTacggttcggcagaaaccagaatcctgtcaaaaagcccaaatattcagccgaatcctggattggGTGCATCCCTAGAAAAGACACAAACCAACTTTTGGTAAAGGTTAATAGCTGTAAAAACAAGCCTCAGCTGTTCAGCCAATGAGATCGCTGTGGGATGTTTGTGCATCTTAAACACTGAATCTGCACCGATGCAGTGTGTGAGGGGGACATTTCAAGTCCGTCTTTTTCCATTCTTCCAGTTTTCTTTCTCCTCGTATCCacacctctgtctctctccttctccttctcggTCTCGGCTCTACCGAAGATGAATTTGTGGGGTTTTTGGGGGTTACAGGAGAAGGTGATTTCTGTGTGGGTTActgaaatgtaatttgtaatatGATTAATAAGATCCGGGTTGTCAGGAAATGGAGGCCACGTAAAAAGCTGGTATTTGTGGTTTTCCGTCTCGGTTCTTATATGTATATTGGAGGCATCTTGgctcacacacatatatatataaatatataaatataaatgtataatttCCTCTTGACAAACATGGTCATCAAGTGCCAAATGCTAGTAGTTATTCTTGCTGGGTATTATTTTTTGGGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2706 lncRNA upstream 66055 6366489 ~ 6466386 (+) False G1932
TU2704 lncRNA upstream 66055 6465439 ~ 6466386 (+) True G1932
TU2719 lncRNA upstream 138857 6393076 ~ 6393584 (+) True G1936
TU2724 lncRNA upstream 182859 6348780 ~ 6349582 (+) True G1941
TU2697 lncRNA upstream 215709 6275673 ~ 6316732 (+) True G1927
TU2772 lncRNA downstream 23236 6557606 ~ 6557845 (+) True G1983
TU3135 lncRNA downstream 47755 6582125 ~ 6582434 (+) True G2230
TU3148 lncRNA downstream 97303 6631673 ~ 6632069 (+) True G2241
TU3173 lncRNA downstream 157771 6692141 ~ 6692371 (+) True G2257
TU3174 lncRNA downstream 159542 6693912 ~ 6694211 (+) True G2258
XM_039810365.1 mRNA upstream 3493 6510225 ~ 6528948 (+) True LOC120565047
XM_039810208.1 mRNA upstream 95224 6407400 ~ 6437217 (+) True aftpha
XM_039823827.1 mRNA upstream 129801 6385601 ~ 6402640 (+) False LOC120573424
XM_039823751.1 mRNA upstream 130401 6385601 ~ 6402040 (+) False LOC120573424
XM_039823636.1 mRNA upstream 130623 6385601 ~ 6401818 (+) False LOC120573424
XM_039815363.1 mRNA downstream 57066 6591436 ~ 6659319 (+) True LOC120568096
XM_039810077.1 mRNA downstream 161214 6695584 ~ 6722958 (+) True LOC120564833
XM_039810088.1 mRNA downstream 193558 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA downstream 195488 6729858 ~ 6763797 (+) True LOC120564849
XM_039810376.1 mRNA downstream 703701 7238071 ~ 7239593 (+) True LOC120565053
TU2728 other upstream 95577 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 95577 6428831 ~ 6436864 (+) False aftpha
XR_005641751.1 other upstream 129801 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other upstream 129801 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other upstream 130401 6385602 ~ 6402040 (+) False LOC120573424
XR_005640968.1 other downstream 263096 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 264120 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 265205 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 267032 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 267635 6802005 ~ 6802119 (+) True LOC120569727

Expression Profile