RNA id: XM_039815363.1


Basic Information

Item Value
RNA id XM_039815363.1
length 1125
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC120568096
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6591436 ~ 6659319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctgtctctctctgtctctctctgtctctgtttgtgcgTTTCTCTCTGCGGCTGGACACGGCTATACACGCGTTACTACACACGGGATTAAGTGATTAACGCTCCGGTACCGGGGGAGTTGGATGAGTGTTTTGCCCCGCAGGAGTCTCCAGGAGTCCGGGCGGAGAGAAGGGGCTGATGGCGCAACGGTATGAAGACCTGGCCCACTACGGGCTGGAGGCCATGGCCGGGGTCTATGGAGACCctcaccaccatcaccaccaccaccacgctgctgctgctgcccgcTCCATGCAGGCCGCCACCGGGCCATTCCCTCCGCACCAGTACGCCCAGTCCAGCCACACCACAGCCGGGGACGCCGCCAAGAGGGACAAAGACGCCATTTATGGacatCCGTTATTCCCTCTGCTCGCACtgatttttgaaaaatgtgaacTGGCGACTTGCACGCCGAGAGAGAGCGGCGTTGCCGGAGGAGACGTCTGCTCCTCGGACTCCTTTAACGAGGACATCGCCGTCTTCTCCAAACAGATCCGGTCGGAGAGGCCTTTCATTTCATCCAACCCAGAGCTGGATAATTTGATGGTCCAGTCGATACAAGTGCTGCGCTTCCACCTCCTGGAGCTGGAGAAGGTTCATGAGCTGTGTGATAACTTCTGCCACCGATACATCAGCTGTCTGAAAGGGAAGATGCCGATCGATCTGGTTATAGACGACCGAGACGGAAACAAGTCGGACAGCGAGGACTTCCTCCGCTCATCAGGGAACAACGTGGATCAGCTCTCGTGGAGCAGAGACCATGACGACGCGGCATCGATACGCTCGGCCGGGACGCCCGGACCCTCCAGCGGTGGACACACGTCTCACAGCGGCGACAACAGCAGCGAACACGGTGACTGTCTGGATAACGGCATGGCTTCTCCCAGCACGGGGGACGACGATGACCCCGACAGAGACAAACTGCACAACAAAAAGAGAGGCATCTTCCCCAAAGTGGCCACCAACATCCTGAGAGCCTGGCTGTTTCAGCACCTCACGCACCCGTACCCGTCGGAGGAGCAGAAGAAGCAGCTGGCTCTGGACACCGGCCTCACCAACCTGCAGGTCAACAACTGGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16672 HTH; homeobox protein homothorax

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3135 lncRNA upstream 9002 6582125 ~ 6582434 (+) True G2230
TU2772 lncRNA upstream 33591 6557606 ~ 6557845 (+) True G1983
TU2706 lncRNA upstream 125050 6366489 ~ 6466386 (+) False G1932
TU2704 lncRNA upstream 125050 6465439 ~ 6466386 (+) True G1932
TU2719 lncRNA upstream 197852 6393076 ~ 6393584 (+) True G1936
TU3173 lncRNA downstream 32822 6692141 ~ 6692371 (+) True G2257
TU3174 lncRNA downstream 34593 6693912 ~ 6694211 (+) True G2258
TU3178 lncRNA downstream 65121 6724440 ~ 6724684 (+) True G2260
TU3183 lncRNA downstream 72796 6732115 ~ 6732673 (+) True G2264
TU3187 lncRNA downstream 95210 6754529 ~ 6755739 (+) True G2267
XM_039810365.1 mRNA upstream 62488 6510225 ~ 6528948 (+) True LOC120565047
XM_039810208.1 mRNA upstream 154219 6407400 ~ 6437217 (+) True aftpha
XM_039823185.1 mRNA upstream 189618 6385602 ~ 6401818 (+) False LOC120573424
XM_039810077.1 mRNA downstream 36265 6695584 ~ 6722958 (+) True LOC120564833
XM_039810088.1 mRNA downstream 68609 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA downstream 70539 6729858 ~ 6763797 (+) True LOC120564849
XM_039810376.1 mRNA downstream 578752 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 730780 7390099 ~ 7437258 (+) True LOC120568176
TU2759 other upstream 57066 6532441 ~ 6534370 (+) True G1973
TU2728 other upstream 154572 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 154572 6428831 ~ 6436864 (+) False aftpha
XR_005641779.1 other upstream 188796 6385602 ~ 6402640 (+) False LOC120573424
XR_005640968.1 other downstream 138147 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 139171 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 140256 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 142083 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 142686 6802005 ~ 6802119 (+) True LOC120569727

Expression Profile