RNA id: XR_005640954.1


Basic Information

Item Value
RNA id XR_005640954.1
length 115
RNA type snRNA
GC content 0.37
exon number 1
gene id LOC120569727
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6802005 ~ 6802119 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACTCttgtttctcttcagatcgtatAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACAATAAGAGttctaaataattttttgatgCCCTGTTTCATGCGGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3188 lncRNA upstream 19093 6774822 ~ 6782912 (+) True G2268
TU3182 lncRNA upstream 26755 6771355 ~ 6775250 (+) True G2263
TU3187 lncRNA upstream 46266 6754529 ~ 6755739 (+) True G2267
TU3183 lncRNA upstream 69332 6732115 ~ 6732673 (+) True G2264
TU3178 lncRNA upstream 77321 6724440 ~ 6724684 (+) True G2260
TU3192 lncRNA downstream 5685 6807804 ~ 6808666 (+) True G2272
TU3194 lncRNA downstream 8631 6810750 ~ 6811453 (+) True G2274
TU3196 lncRNA downstream 12889 6815008 ~ 6815992 (+) True G2276
TU3198 lncRNA downstream 22245 6824364 ~ 6824564 (+) True G2278
TU3199 lncRNA downstream 26273 6828392 ~ 6828667 (+) True G2279
XM_039810088.1 mRNA upstream 38208 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 38208 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 79047 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 142686 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 273057 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 435952 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 587980 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 810804 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 891466 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 916837 7718956 ~ 7743994 (+) True LOC120563246
XR_005640974.1 other upstream 489 6801402 ~ 6801516 (+) True LOC120569789
XR_005640981.1 other upstream 2317 6799575 ~ 6799688 (+) True LOC120569812
XR_005640972.1 other upstream 3401 6798490 ~ 6798604 (+) True LOC120569778
XR_005640968.1 other upstream 4425 6797466 ~ 6797580 (+) True LOC120569765
TU2759 other upstream 267635 6532441 ~ 6534370 (+) True G1973
unassigned_transcript_12 other downstream 364477 7166596 ~ 7166667 (+) True trnae-uuc_10
unassigned_transcript_13 other downstream 364983 7167102 ~ 7167173 (+) True trnae-uuc_11
unassigned_transcript_14 other downstream 365501 7167620 ~ 7167691 (+) True trnae-uuc_12
unassigned_transcript_15 other downstream 366013 7168132 ~ 7168203 (+) True trnae-uuc_13
unassigned_transcript_16 other downstream 368266 7170385 ~ 7170456 (+) True trnae-uuc_14