RNA id: unassigned_transcript_13


Basic Information

Item Value
RNA id unassigned_transcript_13
length 72
RNA type tRNA
GC content 0.56
exon number 1
gene id trnae-uuc_11
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7167102 ~ 7167173 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCAGGCGGCCTGGGTTCAACTCCCGGTATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3320 lncRNA upstream 18618 7147274 ~ 7148484 (+) False G2374
TU3327 lncRNA upstream 18618 7147274 ~ 7148484 (+) True G2374
TU3334 lncRNA upstream 18618 7147274 ~ 7148484 (+) False G2374
TU3301 lncRNA upstream 80843 7085736 ~ 7086259 (+) True G2361
TU3351 lncRNA downstream 74648 7241821 ~ 7243472 (+) True G2386
TU3352 lncRNA downstream 74648 7241821 ~ 7243472 (+) False G2386
TU3407 lncRNA downstream 217959 7385132 ~ 7385353 (+) True G2428
TU3471 lncRNA downstream 386867 7554040 ~ 7557441 (+) True G2486
TU3497 lncRNA downstream 421470 7588643 ~ 7591076 (+) True G2505
XM_039810088.1 mRNA upstream 403305 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 403305 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 444144 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 507783 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 638154 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 70898 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 222926 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 445750 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 526412 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 551783 7718956 ~ 7743994 (+) True LOC120563246
unassigned_transcript_12 other upstream 435 7166596 ~ 7166667 (+) True trnae-uuc_10
XR_005640954.1 other upstream 364983 6802005 ~ 6802119 (+) True LOC120569727
XR_005640974.1 other upstream 365586 6801402 ~ 6801516 (+) True LOC120569789
XR_005640981.1 other upstream 367414 6799575 ~ 6799688 (+) True LOC120569812
XR_005640972.1 other upstream 368498 6798490 ~ 6798604 (+) True LOC120569778
unassigned_transcript_14 other downstream 447 7167620 ~ 7167691 (+) True trnae-uuc_12
unassigned_transcript_15 other downstream 959 7168132 ~ 7168203 (+) True trnae-uuc_13
unassigned_transcript_16 other downstream 3212 7170385 ~ 7170456 (+) True trnae-uuc_14
unassigned_transcript_17 other downstream 3719 7170892 ~ 7170963 (+) True trnae-uuc_15
unassigned_transcript_18 other downstream 4226 7171399 ~ 7171470 (+) True trnae-uuc_16