RNA id: XM_039807381.1


Basic Information

Item Value
RNA id XM_039807381.1
length 1652
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120563246
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7718956 ~ 7743994 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAACTTCCATCAATAAAGAAAGGTTATCCTCTACTTGGAACAACGTTCGAACCAAACCGTTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCCGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGAACGTCTCCAGATGCGAGCTGAGAGAAAAGCTCGGGCAGGCGATCACGCTGCCCCCACGTCTTCAAAAGTTCAAGCAACAATACCTGGCAACAGTTATCTGTGAGGTGAACAGCCGGTCCCGTCTCAACACCGGCCTGGTCAAGGTGTTCGgcaaacacacaaccacaaccacAGCCACGCCAACAACTACGGTCACAACACGACCGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCAGCCAACCAACAACCACTCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAACCAACAACCACCCAGATGACTACCACCCAAACAACTACCACCCAAAGAACTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACAACGGACTACCACCCAAAGAAATACCAAGCCAAAAACTCCGGTCAAAACACAACGGACTACCACCCAAAGAAGTACCAAGCCAACAACTATGGTCAAAACACAACGGACTACCACCCAAAGAACTACCAAGCCAACAACTCCAGTCAAAACACGATGGACTACCACCCAAACAACTACCACTGCTCCAACTACCACCAGACCAATCCCAACAGGTGCCACAAAATCAACCCTAGGCACAAATGGAACCAGAGCTGGCAACAACAGAAGAAAGCGTGACGCAAGCAGCGAGGAACTGCTGAATGAAGATGATGCTGAGGAAGGTGGGAAACGTAAGAAACGATCCAGCAAGGAACAATCCAGTGAGGAGACCAAGCAGTCGTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGATGAGACCTTCTGTAATTCTGGTTATCACTCCTCCAAAAACAAGTGTAACACAACCTGCGATGCCTTCACtgatgacaacattatggacgACATTGATTGCTTAGTGAAGACTGATCAGTGGAGGTTGTTTTTAAATTCTGCCTCTCGCGAGTGCCAATATgtcaacaacaactttttcGACAAATGTTAAAAAGAAGCTGACATGTTTTCCACCTGCTGCTGAAGCTCACACCAACAATCATTTCTTCTACCTTCAATGTGACCTTTGATCCTCATGGTTTCATCTCAAACATTGTGGAGCATTTTATAATTTCTTCATTTTAATTAACCAATGAGATTATTTTGTTTCAGTTCCTTTGTGGGTGAATTTGCCCCCAACTTCAAGTTGAACTGACAAATGTATTTTAGTCATTTGAATAGCTTTGATGATATTGTTTTACCACTTTAATCTACTTTAAAGTGATTATTTCAAGAtgagaaagacaaaaaataaaaatattttttgcatcTTCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3525 lncRNA upstream 58861 7659400 ~ 7660095 (+) True G2524
TU3524 lncRNA upstream 59933 7658404 ~ 7659023 (+) True G2523
TU3510 lncRNA upstream 115365 7602033 ~ 7603591 (+) True G2512
TU3497 lncRNA upstream 127880 7588643 ~ 7591076 (+) True G2505
TU3471 lncRNA upstream 161515 7554040 ~ 7557441 (+) True G2486
TU3545 lncRNA downstream 8719 7752713 ~ 7808364 (+) True G2534
XR_005639929.1 lncRNA downstream 26719 7770713 ~ 7774926 (+) True LOC120563307
TU3558 lncRNA downstream 169758 7913752 ~ 7917581 (+) True G2545
TU3578 lncRNA downstream 219263 7963257 ~ 7965276 (+) True G2561
TU3580 lncRNA downstream 226795 7970789 ~ 7971223 (+) True G2563
XM_039819288.1 mRNA upstream 15125 7693585 ~ 7703831 (+) True LOC120570741
XM_039819062.1 mRNA upstream 78847 7612923 ~ 7640109 (+) True pus10
XM_039815515.1 mRNA upstream 281698 7390099 ~ 7437258 (+) True LOC120568176
XM_039810376.1 mRNA upstream 479363 7238071 ~ 7239593 (+) True LOC120565053
XM_039810088.1 mRNA upstream 955159 6727928 ~ 6763797 (+) False LOC120564849
XM_039807384.1 mRNA downstream 13692 7757686 ~ 7765391 (+) True LOC120563293
XM_039807399.1 mRNA downstream 33868 7777862 ~ 7784253 (+) True LOC120563312
XM_039810774.1 mRNA downstream 57183 7801177 ~ 7803946 (+) True LOC120565219
XM_039807413.1 mRNA downstream 66780 7810774 ~ 7817275 (+) True LOC120563316
XM_039810834.1 mRNA downstream 83595 7827589 ~ 7833507 (+) True LOC120565228
TU3532 other upstream 19416 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 505400 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 505922 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 506951 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 509514 7209371 ~ 7209442 (+) True trnae-uuc_46
TU3574 other downstream 197553 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 345819 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 665863 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 1147454 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1728106 9472100 ~ 9527214 (+) False G3091

Expression Profile