RNA id: XM_039810774.1


Basic Information

Item Value
RNA id XM_039810774.1
length 1430
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120565219
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7801177 ~ 7803946 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCTGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGATCGTCTCTAGATGCGAACTGAGAGAAAAGCTCGGGCAGGCGATCACGCTGCCCCCACGTCTTCAACAGTTCAAGCAACAATACCTGGCAAGAGTTATCTGTGAGGTGAACAGCTGGTCCCATCTCAACACCGGCCTGGTCAAGGTGTTCGGCAAACGCACAACCACAGCCACGCCAACAACTATGGTCAATGAAACTACTATCCAACTAAATACCGCCCAACCAATCCCAACAGATGCCACAAATTCACCCCTAGTCATAAACAGAAGAAAGCGTGCGGCGAGCAGCGAGGCAGGCAGCGTGGTGTCTGACTCTGCTACTACAACCACAGCCAAGCCAACAACTCCGGTCAAAACACGACAGACTACCATCCAAAGAACTACCAAACCAAAAACTCCAGTCAAAACACGACGGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACGGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACGGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACAGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACGGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACAGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACAGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACAGACTACCATCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACAGACTACCACCCAAAGAACTACCAAGCCAAAAACTCCGGTCAAAACACGACAGACTAACATCCAAAGAACTACCAAGCCAACAACTCCGGTCAAAACACAACGGACCACCCACACAACTACCACTGCTCCAACGACCACTCAACCAATCCCAACAGGTGCCACAAAGTCAACCCTAGGCACAAACGGAACCGGAGCTGGCAACAACAGAAGAAAGCGCGAGGCAAGCAGCGAGGAGTCTGACTCGGCAGAGATGGACTCGGGGCTGGAGGAACTGCTGAACTGGCGCAACGAGACGGCGGATGAAGACGAGGCTGAGGAAGACGAGGCTGAGGAAGATGGGGAACATGAGAAGCAACCCAGTGAGGAAACCGAGTCGTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGACGAGACCTTCTGTAGTTCTGGTTATCGCTCCTCCAAAAACAGGTGCAACACAACCTGCGATTCCTTCACTGATGACAACATTACGGACGACATTGATTGCTTTGTGAAGACTGATCAGTGGGGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639929.1 lncRNA upstream 26251 7770713 ~ 7774926 (+) True LOC120563307
TU3525 lncRNA upstream 141082 7659400 ~ 7660095 (+) True G2524
TU3524 lncRNA upstream 142154 7658404 ~ 7659023 (+) True G2523
TU3510 lncRNA upstream 197586 7602033 ~ 7603591 (+) True G2512
TU3497 lncRNA upstream 210101 7588643 ~ 7591076 (+) True G2505
TU3558 lncRNA downstream 109806 7913752 ~ 7917581 (+) True G2545
TU3578 lncRNA downstream 159311 7963257 ~ 7965276 (+) True G2561
TU3580 lncRNA downstream 166843 7970789 ~ 7971223 (+) True G2563
TU3579 lncRNA downstream 170327 7974273 ~ 7975034 (+) True G2562
TU3581 lncRNA downstream 171723 7975669 ~ 7975881 (+) True G2564
XM_039807399.1 mRNA upstream 16924 7777862 ~ 7784253 (+) True LOC120563312
XM_039807384.1 mRNA upstream 35786 7757686 ~ 7765391 (+) True LOC120563293
XM_039807381.1 mRNA upstream 57183 7718956 ~ 7743994 (+) True LOC120563246
XM_039807413.1 mRNA downstream 6828 7810774 ~ 7817275 (+) True LOC120563316
XM_039810834.1 mRNA downstream 23643 7827589 ~ 7833507 (+) True LOC120565228
XM_039805410.1 mRNA downstream 62306 7866252 ~ 7873600 (+) True LOC120562006
XM_039810942.1 mRNA downstream 72056 7876002 ~ 7888374 (+) True LOC120565283
XM_039804030.1 mRNA downstream 96676 7900622 ~ 7913150 (+) True ifngr1
TU3532 other upstream 101637 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 587621 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 588143 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 589172 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 591735 7209371 ~ 7209442 (+) True trnae-uuc_46
TU3574 other downstream 137601 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 285867 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 605911 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 1087502 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1668154 9472100 ~ 9527214 (+) False G3091

Expression Profile