RNA id: XM_039807413.1


Basic Information

Item Value
RNA id XM_039807413.1
length 2138
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120563316
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7810774 ~ 7817275 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCAGATTTTTCTGTCTGAAGACACAGAGCTGCAAACTTCCATCAATAAAGAAAGTTCATACTCTACTTGGAACAACATTCGAACCAAACTGTTGACATGAAGTTTGGGTTGCTGGTGGTATTGGCGGTGGCTGTTCTGGTGCCCAGCCTGTCCGAGGGCCGGATCGTCTCTAGATGCGAACTGAGAGAAAAGCTCGGGCAGGCGATCACGCTGCCCCCACGTCTTCAAAAGTTCAAGCAACAATACCTGGCAACAGTTATCTGTGAGGTGAACAGCAGGTCCCGTCTGAACACCAACCTGGTCAAGGTGTTCGGCAAACGCACAACTACAACCACAGCCGCGGCAACAACTCCGGTCATAACTCTTGCACCACAAGTAAATGAAACGACCGCTGAACCAACAACTATCCAACTGAATACCACCGGAACAACGATCACCGCACCAACTACCACCCAAACAACGATCACCGCACCAACTACCACCCAAACGCCTACCACCCAAACGCCTATCACCCCACCACCTCCAAACAGAAGAAAGCGCGGGGTGAGCAGCGAGGAGTCTGACTCTGCAGAGATGCACTCTAGCCAGGGGGAACTGCTGAACGAGAGCGACGAGATGACAACGCAGGGTGTCAACGGCACGGTCGATGAGGATGGAGACAAGGCTAAAGGCAGTGATAAGAGGGATGAAGACGAGGATGAAGACAGCGATGAGAGGGATGAGGACGAAGCTGAGGAAGGTGGGAAACGTAAGAAGCGATCCAGCGAGAAGCGATCCAGCGAGGACCGATCTAGCGAGGACCGATCCAGCGAGGACCGATCCAGTGAGGAGACCAAGCTTTCTTCTCTCGGCCTTTACGGGATCTTCCAGCTGTCTGACAAGACCTTCTGTAATTCTGGCTATCGCTCCTCCAAAAACAAGTGCAACACAACCTGTGATGCCTTCACTGATGACGACATTTCGGACGACATCGCTTGCTTTGTGAAGACTGATCAGTGGGGGTTGTTTTTGAAGTCCGCCTCTCGTCTGTGCCAAACTGGCACCAAGAACTACTTTGACGAGTGTAAATGAGCAGCTGACACGTTTTCCACCTGCTGCTGAAGCTCACACCAGCAATCATTTCTTCTTCCTTCAATGCAGAGCgtgaactacgggggagctagggggtgCTCGGCTCCCCTGAATatgaaattttggggggggtgtctcttttgtgtaatgtgatcattgtggattattatgtgtaaaattgcaaaaatatcactcattcatgcatgacggcgatttaaacctaattcacttcaataaagataacgaTACGTGCTATTCGTGTCAtaagcatcaaggcgtggcagCGCTGCGGtacaaattcaactcatgtttagtacatgttgaCTCAAAGAGTCGTAGGAAAAATATgagccattaatcggcgcgcaaagtctttgaaatccattctgcagtaagcatatagccatggcaaaaagaaaacaaggcagtttaattcattTAGATTTTTACTAAGCAATTGTATAGCGATGATGTTAATAGCACGACCAATTCACCTGTTGCAAGCCCTGTTGGCACACCTCCCGTCGGGgagacaacgcaagaagaagctgaagaaataatgtcctctctggctgaagatggagGTGGTAACAGCTCGTCAGAAGCTGGTCAccatcctaacccctcttgctcctctctcccccgttaaattggaacagccagcagtggagagactggaagagcccatataggcctacatggctgtttgttaaggatcgaagcttggggtgcgtcgcttaGGCCTAATTGAATGGAGGAgttatggtattcttcggtagcctgagtaactttaaccgttgttcatgtgaaatctcagagacagcctgatgctttttttattgactatttgtggctggatgtttgctgtttgacctatcaattcctgtcgataaagtagaatagggtaaatcctgtatagtgcatacacttgtaagtcattgtaagtcgtAAGAGCATTatgacttacaatgacttacccCCATTATTTCAAATGTGAAAACTGAGAAAATGATTTTTGTCTCTTCTGCTATCTGTAACTTTCCAATAAACATATTTAGCAATTTA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3545 lncRNA upstream 2410 7752713 ~ 7808364 (+) True G2534
XR_005639929.1 lncRNA upstream 35848 7770713 ~ 7774926 (+) True LOC120563307
TU3525 lncRNA upstream 150679 7659400 ~ 7660095 (+) True G2524
TU3524 lncRNA upstream 151751 7658404 ~ 7659023 (+) True G2523
TU3510 lncRNA upstream 207183 7602033 ~ 7603591 (+) True G2512
TU3558 lncRNA downstream 96477 7913752 ~ 7917581 (+) True G2545
TU3578 lncRNA downstream 145982 7963257 ~ 7965276 (+) True G2561
TU3580 lncRNA downstream 153514 7970789 ~ 7971223 (+) True G2563
TU3579 lncRNA downstream 156998 7974273 ~ 7975034 (+) True G2562
TU3581 lncRNA downstream 158394 7975669 ~ 7975881 (+) True G2564
XM_039810774.1 mRNA upstream 6828 7801177 ~ 7803946 (+) True LOC120565219
XM_039807399.1 mRNA upstream 26521 7777862 ~ 7784253 (+) True LOC120563312
XM_039807384.1 mRNA upstream 45383 7757686 ~ 7765391 (+) True LOC120563293
XM_039807383.1 mRNA upstream 66780 7740391 ~ 7743994 (+) False LOC120563246
XM_039807380.1 mRNA upstream 84238 7718956 ~ 7726536 (+) False LOC120563246
XM_039810834.1 mRNA downstream 10314 7827589 ~ 7833507 (+) True LOC120565228
XM_039805410.1 mRNA downstream 48977 7866252 ~ 7873600 (+) True LOC120562006
XM_039810942.1 mRNA downstream 58727 7876002 ~ 7888374 (+) True LOC120565283
XM_039804030.1 mRNA downstream 83347 7900622 ~ 7913150 (+) True ifngr1
XM_039804026.1 mRNA downstream 83347 7900622 ~ 7913061 (+) False ifngr1
TU3532 other upstream 111234 7699265 ~ 7699540 (+) True G2530
unassigned_transcript_51 other upstream 597218 7213485 ~ 7213556 (+) True trnae-uuc_49
unassigned_transcript_50 other upstream 597740 7212963 ~ 7213034 (+) True trnae-uuc_48
unassigned_transcript_49 other upstream 598769 7211934 ~ 7212005 (+) True trnae-uuc_47
unassigned_transcript_48 other upstream 601332 7209371 ~ 7209442 (+) True trnae-uuc_46
TU3574 other downstream 124272 7941547 ~ 7948253 (+) True G2557
TU3609 other downstream 272538 8089813 ~ 8091505 (+) True G2590
TU3639 other downstream 592582 8409857 ~ 8410935 (+) False LOC120565323
TU4189 other downstream 1074173 8891448 ~ 8893493 (+) False zbtb45
TU4342 other downstream 1654825 9472100 ~ 9527214 (+) False G3091

Expression Profile