RNA id: XR_005640972.1


Basic Information

Item Value
RNA id XR_005640972.1
length 115
RNA type snRNA
GC content 0.38
exon number 1
gene id LOC120569778
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6798490 ~ 6798604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCTCttgtttctcttcagatcgtatAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACATTAagagtttcaaataattttttgatgCACTGCTTCATGCGGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3188 lncRNA upstream 15578 6774822 ~ 6782912 (+) True G2268
TU3182 lncRNA upstream 23240 6771355 ~ 6775250 (+) True G2263
TU3187 lncRNA upstream 42751 6754529 ~ 6755739 (+) True G2267
TU3183 lncRNA upstream 65817 6732115 ~ 6732673 (+) True G2264
TU3178 lncRNA upstream 73806 6724440 ~ 6724684 (+) True G2260
TU3192 lncRNA downstream 9200 6807804 ~ 6808666 (+) True G2272
TU3194 lncRNA downstream 12146 6810750 ~ 6811453 (+) True G2274
TU3196 lncRNA downstream 16404 6815008 ~ 6815992 (+) True G2276
TU3198 lncRNA downstream 25760 6824364 ~ 6824564 (+) True G2278
TU3199 lncRNA downstream 29788 6828392 ~ 6828667 (+) True G2279
XM_039810088.1 mRNA upstream 34693 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA upstream 34693 6729858 ~ 6763797 (+) True LOC120564849
XM_039810077.1 mRNA upstream 75532 6695584 ~ 6722958 (+) True LOC120564833
XM_039815363.1 mRNA upstream 139171 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 269542 6510225 ~ 6528948 (+) True LOC120565047
XM_039810376.1 mRNA downstream 439467 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 591495 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 814319 7612923 ~ 7640109 (+) True pus10
XM_039819288.1 mRNA downstream 894981 7693585 ~ 7703831 (+) True LOC120570741
XM_039807381.1 mRNA downstream 920352 7718956 ~ 7743994 (+) True LOC120563246
XR_005640968.1 other upstream 910 6797466 ~ 6797580 (+) True LOC120569765
TU2759 other upstream 264120 6532441 ~ 6534370 (+) True G1973
TU2728 other upstream 361626 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 361626 6428831 ~ 6436864 (+) False aftpha
XR_005641746.1 other upstream 396450 6385602 ~ 6402040 (+) False LOC120573424
XR_005640981.1 other downstream 971 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 2798 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 3401 6802005 ~ 6802119 (+) True LOC120569727
unassigned_transcript_12 other downstream 367992 7166596 ~ 7166667 (+) True trnae-uuc_10
unassigned_transcript_13 other downstream 368498 7167102 ~ 7167173 (+) True trnae-uuc_11

Expression Profile