RNA id: XM_039810077.1


Basic Information

Item Value
RNA id XM_039810077.1
length 1238
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC120564833
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6695584 ~ 6722958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGAGGGTGGACGTGTGAGTGAGTCTGGAGGCAAACAGAGGCACACGAAGCCGTGAAGTCGAACTGCAGTGCGGTTTAAAGTCAACTCTGGTGccgctgcctgtctgtctgtctctgtgggtgtttacctgtctctctgtctttctcccgGTACCGTTTCGGGTCGAGACGCCATTTCTGCATCAGAGGAGAGTCAGTTTGTCTGTGAACGACAGCAAAAACCACCGGCGGGACCATGTTGACTATGCTAACTTCCATGTATCTGGTGGTGAGGGCGGTTTCTCCGCAGccCGAACCAATCCGTGTCGTGGTGACCGGCGCTGCTGGCCAGATTGCCTACTCCCTGCTGTACAGCATCGCCAAGGGAGATGTGTTCGGGAAGGACCAGCCAATCATCTTGGTCCTGCTGGACATCCCCCCCATGCTGCCCGTGCTGGACGGGGTCGTCATGGAGCTGCAGGACTGCGCCCTCCCACTGCTGAGGGAGGTGATCCCCACTGACAAGGTGGAGGTTGGCTTCAAGGACCTGGACGCGGCCATCTTGGTGGGCTCCATGCCCAGGAAGGAGGGGATGGAGAGGAAGGACCTGCTGAAGGCCAACGTGGCCATCTTCAAGACTCAGGGAGCCGCCCTGGACAAGTACGCCAAGAAGACCGTCAAGgttctGGTGGTTGGAAACCCAGCAAATACCAACTGTCTGATCGCCTCCAAGTCTGCTCCATCCATCCCTAAAGAGAACTTCTCCTGcctgacaagacacacacacacacgggctcGCCTGCAGGTGGCGATGCGCTGCGGCGTGTCCTCCGACAAAGTGAAGAACGTCATCATCTGGGGGAACCACTCGTCCACCCAGTACCCCGACGTCCACCACGCCAAGGTCAACCTGCACGGCAGCGAGACGCCCGCCTACGACGCCGTGAAGGACGAGACCTGGCTCAGAGGAGACTTCATCTCCACGGTGCAGCAGCGCGGCGCCGCCGTCATCAAAGCCAGGAAGCTGTCCAGCGCCATGTCTGCCGCCAAGGCCATCTGCGACCACATGAGGGACATCTGGTTCGGCACCAAGGAGGGTGAGTTCATCTCCATGGGCGTGTACGCTGCCGGAAACTCCTACGGCATCCCAGAGGACCTCATCTACTCCTTCCCCGTCGAGATCAAGGTCAGTTCAACCAATCAGCTGCCtgctgtgcgtgcgtgcgactatttggtgatttaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K00024 mdh; malate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3174 lncRNA upstream 1373 6693912 ~ 6694211 (+) True G2258
TU3173 lncRNA upstream 3213 6692141 ~ 6692371 (+) True G2257
TU3148 lncRNA upstream 63515 6631673 ~ 6632069 (+) True G2241
TU3135 lncRNA upstream 113150 6582125 ~ 6582434 (+) True G2230
TU2772 lncRNA upstream 137739 6557606 ~ 6557845 (+) True G1983
TU3178 lncRNA downstream 1482 6724440 ~ 6724684 (+) True G2260
TU3183 lncRNA downstream 9157 6732115 ~ 6732673 (+) True G2264
TU3187 lncRNA downstream 31571 6754529 ~ 6755739 (+) True G2267
TU3182 lncRNA downstream 48397 6771355 ~ 6775250 (+) True G2263
TU3188 lncRNA downstream 51864 6774822 ~ 6782912 (+) True G2268
XM_039815363.1 mRNA upstream 36265 6591436 ~ 6659319 (+) True LOC120568096
XM_039810365.1 mRNA upstream 166636 6510225 ~ 6528948 (+) True LOC120565047
XM_039810208.1 mRNA upstream 258367 6407400 ~ 6437217 (+) True aftpha
XM_039823493.1 mRNA upstream 293766 6385602 ~ 6401818 (+) False LOC120573424
XM_039810088.1 mRNA downstream 4970 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA downstream 6900 6729858 ~ 6763797 (+) True LOC120564849
XM_039810376.1 mRNA downstream 515113 7238071 ~ 7239593 (+) True LOC120565053
XM_039815515.1 mRNA downstream 667141 7390099 ~ 7437258 (+) True LOC120568176
XM_039819062.1 mRNA downstream 889965 7612923 ~ 7640109 (+) True pus10
TU2759 other upstream 161214 6532441 ~ 6534370 (+) True G1973
TU2728 other upstream 258720 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 258720 6428831 ~ 6436864 (+) False aftpha
XR_005641746.1 other upstream 293544 6385602 ~ 6402040 (+) False LOC120573424
XR_005640968.1 other downstream 74508 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 75532 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 76617 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 78444 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 79047 6802005 ~ 6802119 (+) True LOC120569727

Expression Profile