RNA id: TU3135



Basic Information


Item Value
RNA id TU3135
length 310
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2230
representative True

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6582125 ~ 6582434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GACAGATCCACATGAATGTTATAAgagatgtataagcatgagaggcCTGCAGGGACAGTGATTCAgtctgcatggtaaggtgctctatgagagggtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2772 lncRNA upstream 24280 6557606 ~ 6557845 (+) True G1983
TU2706 lncRNA upstream 115739 6366489 ~ 6466386 (+) False G1932
TU2704 lncRNA upstream 115739 6465439 ~ 6466386 (+) True G1932
TU2719 lncRNA upstream 188541 6393076 ~ 6393584 (+) True G1936
TU2724 lncRNA upstream 232543 6348780 ~ 6349582 (+) True G1941
TU3148 lncRNA downstream 49239 6631673 ~ 6632069 (+) True G2241
TU3173 lncRNA downstream 109707 6692141 ~ 6692371 (+) True G2257
TU3174 lncRNA downstream 111478 6693912 ~ 6694211 (+) True G2258
TU3178 lncRNA downstream 142006 6724440 ~ 6724684 (+) True G2260
TU3183 lncRNA downstream 149681 6732115 ~ 6732673 (+) True G2264
XM_039810365.1 mRNA upstream 53177 6510225 ~ 6528948 (+) True LOC120565047
XM_039810208.1 mRNA upstream 144908 6407400 ~ 6437217 (+) True aftpha
XM_039823493.1 mRNA upstream 180307 6385602 ~ 6401818 (+) False LOC120573424
XM_039815363.1 mRNA downstream 9002 6591436 ~ 6659319 (+) True LOC120568096
XM_039810077.1 mRNA downstream 113150 6695584 ~ 6722958 (+) True LOC120564833
XM_039810088.1 mRNA downstream 145494 6727928 ~ 6763797 (+) False LOC120564849
XM_039810078.1 mRNA downstream 147424 6729858 ~ 6763797 (+) True LOC120564849
XM_039810376.1 mRNA downstream 655637 7238071 ~ 7239593 (+) True LOC120565053
TU2759 other upstream 47755 6532441 ~ 6534370 (+) True G1973
TU2728 other upstream 145261 6428831 ~ 6436864 (+) False aftpha
TU2729 other upstream 145261 6428831 ~ 6436864 (+) False aftpha
XR_005641746.1 other upstream 180085 6385602 ~ 6402040 (+) False LOC120573424
XR_005640968.1 other downstream 215032 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 216056 6798490 ~ 6798604 (+) True LOC120569778
XR_005640981.1 other downstream 217141 6799575 ~ 6799688 (+) True LOC120569812
XR_005640974.1 other downstream 218968 6801402 ~ 6801516 (+) True LOC120569789
XR_005640954.1 other downstream 219571 6802005 ~ 6802119 (+) True LOC120569727

Expression Profile