RNA id: TU2724


Basic Information

Item Value
RNA id TU2724
length 338
lncRNA type intronic
GC content 0.60
exon number 2
gene id G1941
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6348780 ~ 6349582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacagctagctagactatctgtctgtctgtctgtctgtctgtctaactggtcctcagatctctgcagggtaaatccagacagctagctagactatctgtctgtctgtctgtctgtctaacagctcctcagatctctgcagggtaaatccagacagctagctagactatctgtctgtctgtctgtctaactggtcctcagatctctgcagggtaaatccagacagctagctagactatctgtctgtctgtctgtctgtctgtctgtctaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtctgtctgtctgtctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2697 lncRNA upstream 32048 6275673 ~ 6316732 (+) True G1927
TU2698 lncRNA upstream 32048 6316262 ~ 6316732 (+) False G1927
TU2699 lncRNA upstream 32048 6316262 ~ 6316732 (+) False G1927
TU2667 lncRNA upstream 60611 6234343 ~ 6288169 (+) False G1915
TU2668 lncRNA upstream 60611 6234343 ~ 6288169 (+) False G1915
TU2706 lncRNA downstream 16907 6366489 ~ 6466386 (+) False G1932
TU2719 lncRNA downstream 43494 6393076 ~ 6393584 (+) True G1936
TU2704 lncRNA downstream 115857 6465439 ~ 6466386 (+) True G1932
TU2772 lncRNA downstream 208024 6557606 ~ 6557845 (+) True G1983
TU3135 lncRNA downstream 232543 6582125 ~ 6582434 (+) True G2230
XM_039808508.1 mRNA upstream 116181 6163406 ~ 6232599 (+) True ppp3r1b
XM_039808518.1 mRNA upstream 116181 6223422 ~ 6232599 (+) False ppp3r1b
XM_039808530.1 mRNA upstream 191389 6148380 ~ 6157391 (+) True cnrip1a
XM_039808483.1 mRNA upstream 202753 6132635 ~ 6146027 (+) False LOC120563935
XM_039823827.1 mRNA downstream 36019 6385601 ~ 6402640 (+) False LOC120573424
XM_039823751.1 mRNA downstream 36019 6385601 ~ 6402040 (+) False LOC120573424
XM_039823636.1 mRNA downstream 36019 6385601 ~ 6401818 (+) False LOC120573424
XM_039823410.1 mRNA downstream 36020 6385602 ~ 6401818 (+) False LOC120573424
XM_039823185.1 mRNA downstream 36020 6385602 ~ 6401818 (+) False LOC120573424
TU2539 other upstream 432406 5876608 ~ 5916374 (+) False snrpb2
TU2438 other upstream 973873 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 1021023 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 1126036 5218068 ~ 5222744 (+) True G1756
TU2209 other upstream 1310066 5034565 ~ 5038714 (+) True G1600
XR_005641751.1 other downstream 36020 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 36020 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 36020 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 36020 6385602 ~ 6402040 (+) False LOC120573424
TU2728 other downstream 79249 6428831 ~ 6436864 (+) False aftpha

Expression Profile