RNA id: XM_039823751.1


Basic Information

Item Value
RNA id XM_039823751.1
length 883
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC120573424
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6385601 ~ 6402640 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caatttttttaccTTTCTTTTGTGACGTTTTTGTCTCGACATCGATGTTATTcaggatttaaaaataaaacggcAGAAGCAAAGATAGACAAGCTCCGGACTTCAGCTGCAGACTTTCTGTGAGGTTGAAGCTCTGACGTCAGCGTCGACAGGAGGCAGACAAAACTGGACCTGCGGctcattttttttccagtttccTTTCAGGTCACCAACATGGCTGAAACGCACAGCAGAGTGACAGCGCAGGGCAGGAAGAAGTGGGTCGTTCCTCAGAGAAGCGCCACGGATGAAAACAAACCGAGAGGTCGTCCTCCGGACAAAGATGCTGACAGAAATCTGgcggTTCCTTTCAGAGGACACATCTCCGACGGGATGCGTCCAGGGAAGAAGGTTGTGGTGGTCGGTGTGGTGGACTCCCGTCCTGACAGGTTCTACCTCGCCCTGACGCGAGGCCGTGGGACATCCGGGGAGCCGCCGCCGGACGTGGCTCTGGAGCTCTGTGTTCGTTTCGGGGACAGGCAAGTCCTGCGCAGAGCCTGCGTGTCTGGATCCTGGGGGGACACCGACAGAGCCGTGCCTTTCTTCCCCTTCATCAGAGGCCAGCCGTTCAAGATTGAGATCCACTGTGAACAAAGTGGGTTTCGTGTGTTTGTGGACGGACAGAAGCTGTTTGACTTCCACCACCGGTTGCTGTCCCTCGGTGACATCGACACGGTGTGGATCAAAGGCAGcctcaccatcaccaaactagcCTGAGGTACAGGACAGACCTCCAGGTCTCACCGTCACCAAACTAGCCTGAGGTAAAGGACAGACCTCCAGGTCTCACCGTCACCAAACTAGCCTGAGGTAAAGGACAGACCTCAAGGTCTCACCGTCCCAA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2724 lncRNA upstream 36019 6348780 ~ 6349582 (+) True G1941
TU2697 lncRNA upstream 68869 6275673 ~ 6316732 (+) True G1927
TU2698 lncRNA upstream 68869 6316262 ~ 6316732 (+) False G1927
TU2699 lncRNA upstream 68869 6316262 ~ 6316732 (+) False G1927
TU2695 lncRNA upstream 110091 6273836 ~ 6275510 (+) True G1926
TU2704 lncRNA downstream 63399 6465439 ~ 6466386 (+) True G1932
TU2772 lncRNA downstream 155566 6557606 ~ 6557845 (+) True G1983
TU3135 lncRNA downstream 180085 6582125 ~ 6582434 (+) True G2230
TU3148 lncRNA downstream 229633 6631673 ~ 6632069 (+) True G2241
TU3173 lncRNA downstream 290101 6692141 ~ 6692371 (+) True G2257
XM_039817350.1 mRNA upstream 7910 6338303 ~ 6377691 (+) True LOC120569490
XM_039808508.1 mRNA upstream 153002 6163406 ~ 6232599 (+) True ppp3r1b
XM_039808518.1 mRNA upstream 153002 6223422 ~ 6232599 (+) False ppp3r1b
XM_039808530.1 mRNA upstream 228210 6148380 ~ 6157391 (+) True cnrip1a
XM_039808473.1 mRNA upstream 244055 6132635 ~ 6141546 (+) True LOC120563935
XM_039810208.1 mRNA downstream 5360 6407400 ~ 6437217 (+) True aftpha
XM_039810365.1 mRNA downstream 108185 6510225 ~ 6528948 (+) True LOC120565047
XM_039815363.1 mRNA downstream 189396 6591436 ~ 6659319 (+) True LOC120568096
XM_039810077.1 mRNA downstream 293544 6695584 ~ 6722958 (+) True LOC120564833
XM_039810088.1 mRNA downstream 325888 6727928 ~ 6763797 (+) False LOC120564849
TU2539 other upstream 469227 5876608 ~ 5916374 (+) False snrpb2
TU2438 other upstream 1010694 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 1057844 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 1162857 5218068 ~ 5222744 (+) True G1756
TU2209 other upstream 1346887 5034565 ~ 5038714 (+) True G1600
TU2728 other downstream 26791 6428831 ~ 6436864 (+) False aftpha
TU2729 other downstream 26791 6428831 ~ 6436864 (+) False aftpha
TU2759 other downstream 130401 6532441 ~ 6534370 (+) True G1973
XR_005640968.1 other downstream 395426 6797466 ~ 6797580 (+) True LOC120569765
XR_005640972.1 other downstream 396450 6798490 ~ 6798604 (+) True LOC120569778

Expression Profile