Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039808518.1 |
| length | 1404 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | ppp3r1b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_053112.1 |
| NCBI id | CM020909.1 |
| chromosome length | 48724115 |
| location | 6163406 ~ 6232599 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:1900740 | positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0038095 | Fc-epsilon receptor signaling pathway | biological_process |
| GO:0001837 | epithelial to mesenchymal transition | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0001569 | branching involved in blood vessel morphogenesis | biological_process |
| GO:0060487 | lung epithelial cell differentiation | biological_process |
| GO:0097193 | intrinsic apoptotic signaling pathway | biological_process |
| GO:0042383 | sarcolemma | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005955 | calcineurin complex | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0005516 | calmodulin binding | molecular_function |
| GO:0019899 | enzyme binding | molecular_function |
| GO:0019904 | protein domain specific binding | molecular_function |
| GO:0004723 | calcium-dependent protein serine/threonine phosphatase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2547 | lncRNA | upstream | 6366 | 6208755 ~ 6217056 (+) | True | G1826 |
| TU2638 | lncRNA | upstream | 92955 | 6039592 ~ 6130467 (+) | True | G1897 |
| TU2651 | lncRNA | upstream | 96889 | 6125367 ~ 6126533 (+) | True | G1906 |
| TU2650 | lncRNA | upstream | 103893 | 6119047 ~ 6119529 (+) | True | G1905 |
| TU2640 | lncRNA | upstream | 111821 | 6111214 ~ 6111601 (+) | True | G1898 |
| TU2664 | lncRNA | downstream | 1744 | 6234343 ~ 6238207 (+) | False | G1915 |
| TU2665 | lncRNA | downstream | 1744 | 6234343 ~ 6238207 (+) | True | G1915 |
| TU2667 | lncRNA | downstream | 1744 | 6234343 ~ 6288169 (+) | False | G1915 |
| TU2668 | lncRNA | downstream | 1744 | 6234343 ~ 6288169 (+) | False | G1915 |
| TU2669 | lncRNA | downstream | 1744 | 6234343 ~ 6238207 (+) | False | G1915 |
| XM_039808530.1 | mRNA | upstream | 66031 | 6148380 ~ 6157391 (+) | True | cnrip1a |
| XM_039808483.1 | mRNA | upstream | 77395 | 6132635 ~ 6146027 (+) | False | LOC120563935 |
| XM_039808473.1 | mRNA | upstream | 81876 | 6132635 ~ 6141546 (+) | True | LOC120563935 |
| XM_039808542.1 | mRNA | upstream | 95979 | 6120394 ~ 6127443 (+) | True | LOC120563973 |
| XM_039808329.1 | mRNA | upstream | 113982 | 6105145 ~ 6109440 (+) | False | LOC120563868 |
| XM_039817350.1 | mRNA | downstream | 105704 | 6338303 ~ 6377691 (+) | True | LOC120569490 |
| XM_039823827.1 | mRNA | downstream | 153002 | 6385601 ~ 6402640 (+) | False | LOC120573424 |
| XM_039823751.1 | mRNA | downstream | 153002 | 6385601 ~ 6402040 (+) | False | LOC120573424 |
| XM_039823636.1 | mRNA | downstream | 153002 | 6385601 ~ 6401818 (+) | False | LOC120573424 |
| XM_039823410.1 | mRNA | downstream | 153003 | 6385602 ~ 6401818 (+) | False | LOC120573424 |
| TU2539 | other | upstream | 307048 | 5876608 ~ 5916374 (+) | False | snrpb2 |
| TU2438 | other | upstream | 848515 | 5372617 ~ 5374907 (+) | True | G1775 |
| TU2415 | other | upstream | 895665 | 5235346 ~ 5327757 (+) | False | LOC120563544 |
| TU2407 | other | upstream | 1000678 | 5218068 ~ 5222744 (+) | True | G1756 |
| TU2209 | other | upstream | 1184708 | 5034565 ~ 5038714 (+) | True | G1600 |
| XR_005641751.1 | other | downstream | 153003 | 6385602 ~ 6402640 (+) | True | LOC120573424 |
| XR_005641779.1 | other | downstream | 153003 | 6385602 ~ 6402640 (+) | False | LOC120573424 |
| XR_005641746.1 | other | downstream | 153003 | 6385602 ~ 6402040 (+) | False | LOC120573424 |
| XR_005641785.1 | other | downstream | 153003 | 6385602 ~ 6402040 (+) | False | LOC120573424 |
| TU2728 | other | downstream | 196232 | 6428831 ~ 6436864 (+) | False | aftpha |
