RNA id: XM_039808329.1


Basic Information

Item Value
RNA id XM_039808329.1
length 2994
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120563868
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6105145 ~ 6109440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCTGCAGTAAGAGGCGGAGCTACACTGGAAAGAGGAGAGCTTCAACGTCACACTCCAGAAATGAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTCGAGAcaagtctctgtttctctctgaaagaaaactcaaactgacttcatcaggtctttctcaacaacacagcagagtctctgccaaacactgATATGGCTGCGGCAAACTATCTGCCATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTAGCCATACCATGTGGTCACAACTTCTGCAAGAACTGCATCAATGAACAATGGAATTTCAATGAGCAGTACATGTGTCCGATGTGTAAAAAGGTTTTCAACACAAAACCTGAGCTGCATGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagtgtccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtcTCCTACTGTGAGACTCACCTGGAGTCTCATCTGACCATGTCAGGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccaaccagacatgtgtctgcatgGTCTGTACTGTTTTAGATCACAAGAAGCATGATGTTGTTCCTCTGAAAGAAGAATATGAAGAAAAGAAGGTCAAGCTGGAGGCTGAAATTCagcagatgatccagaagagacgactgaagattcaggagatcaaacactcagtcgacctcagtgaggaagatgcagacagagagctagcagaaggtgttcagttcttcacttctctgaaggagtctgttgaGAGAGGCCTGAACGAGCTCACTGACAcgatcaaagagaagcagaaaacaacagaaaaacaggctGAAGCTTTCATCAAAGAGCTGAAACTGGAAATTTCTGAGCTGATGAAGAGaagcactgaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAAAACCAACCAACCTTCACCCACCAAGGACTGGACAAAGGTCAGCGTCCGTCCATCGTATGCAGGAACTGTGGTGAGAGCTGTAGCTCAGCTGGAGGAGACGCTCAGTAAAGAGATGAAGAAGCTGGGTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttgatcctgatacagcaCATCCTAATCTCATCCTGTCTCATGGTAGGAAACAAGTGTGTACTGGTAAGGTTAAGAAGAATCTcccaaacaacccagagagatTTTCTCTCATtccctgtgttttaggaaagCAGAGTTTCTCTTCTGGCAAATATTACTTTGAGGTTCAAGTTAAAGGAAAGACTGAATGGGATTTAGGAGTGGCCAGAGAGTCGGTCAACAGGAAGGAAAACATCCCTCTGAACCCTGAGGATGGTTACTGGACTATATGGATGATAAATGGAAATGAGTACGAAGCTCTTGCTGGCCATcctgtccatctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacgtagatgctgcagcttttatctactcctttactggctgctccttcactgagaaactcttcTTATACCTTTGGCCTGGGAATAATGAAGATGGTAAAAATTCTGCAcctctgatcatctctcctgtcagagTAAACTAATCACTCATCTTATTTCATGTATTGATACATTTCTATTAACAAATAACAAATGTACATTTAATAGTTTacatcttatttgtttacagaATCTGTTTCCTGTGGTGATTGATTTTTTACTATATGTATCTGATGACAGAGTCAACCCATTCATTTGATGCATCATGACGCACGTTATGTGGACGATATCTATTTCCACCTCTGTTAAACCCACAGACATTAATTATAACTTCCAGAAGAAATCAGTTTCTAAAGACAACAAATATGTCAAGATGATGAATCATACTTTCTAACTGATGTGCAGCCACGGAAAATATATAGCTGAATATTTCATTGCGTCAGGAAGCTTAATTTAAGAGTAAGGCCTATGTGGCCGTTTGGCTCGGTTGGTGGAGCAGGCCCACATGTGTAGAGGCTTGttcctcgatgcagaaggtccagggttcgaatccgacctgtggtgGTTTACCGCGTGTCTTCCCCCTTCTCTCATCTCAGTTTTCCTATCCCAATAAAGGCCTatttaaaaatctttaaaaaaaaagtaaggcaTATCACATCCtatagtgtctacagaacacaGTATTTGTCGTTATACCGGCTATAAAAACTACTTCTcagttttgtttggttttgtgaGTCCTGATAAGATGGTTTATGAGTCAAAGAAatctgtaaataataataaataaaaaatgtattgtttataATGGCAGCTGAGGGATACAGCGTTCCTAGTCAATACTAGACCAATGAAATTACCCTTTTAATGTTCACAGGCAGCCACAGTCTAACGTCATCGTGACTCCTAACTCTTTACCAGGAGAACCAGCTGATACGCTACTGGTTACTAATGCCCgtgaaaaataatgtgtgtatCTGCCTTGTGATTTGAATCCGCTCCAAAATGTATTGGGTTCTTctttggcccatgctacaccatTCCAAGtttcattatattattatattatattgatgTGGGATTTGTGATCGGTCTTGTTGTTTTGTTAGAAGTCATGTTTTTACTGTTGGATTTAAACTGTGCCCTGCCTTGGGactgcagatgtaaattagcctaaggctaactctggtacaatgCATCATATGGCAACATTATGTTAAAAATTGTACATGGTCCctaacaaataaaatgaatacaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2643 lncRNA upstream 41508 6062128 ~ 6063637 (+) True G1900
TU2546 lncRNA upstream 73952 5982165 ~ 6031193 (+) True G1825
TU2552 lncRNA upstream 83125 6004393 ~ 6022020 (+) True G1831
TU2561 lncRNA upstream 88504 5960215 ~ 6016641 (+) True G1840
TU2640 lncRNA downstream 1774 6111214 ~ 6111601 (+) True G1898
TU2650 lncRNA downstream 9607 6119047 ~ 6119529 (+) True G1905
TU2651 lncRNA downstream 15927 6125367 ~ 6126533 (+) True G1906
TU2547 lncRNA downstream 99315 6208755 ~ 6217056 (+) True G1826
TU2664 lncRNA downstream 124903 6234343 ~ 6238207 (+) False G1915
XM_039808352.1 mRNA upstream 11418 6090194 ~ 6093727 (+) False LOC120563871
XM_039808345.1 mRNA upstream 11419 6088852 ~ 6093726 (+) True LOC120563871
XM_039808449.1 mRNA upstream 46556 6039211 ~ 6058589 (+) True prokr1a
XM_039808496.1 mRNA upstream 222722 5876547 ~ 5882423 (+) True snrpb2
XM_039808423.1 mRNA upstream 301911 5790297 ~ 5803234 (+) False LOC120563910
XM_039808542.1 mRNA downstream 10954 6120394 ~ 6127443 (+) True LOC120563973
XM_039808483.1 mRNA downstream 23195 6132635 ~ 6146027 (+) False LOC120563935
XM_039808473.1 mRNA downstream 23195 6132635 ~ 6141546 (+) True LOC120563935
XM_039808530.1 mRNA downstream 38940 6148380 ~ 6157391 (+) True cnrip1a
XM_039808508.1 mRNA downstream 53966 6163406 ~ 6232599 (+) True ppp3r1b
TU2539 other upstream 188771 5876608 ~ 5916374 (+) False snrpb2
TU2438 other upstream 730238 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 777388 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 882401 5218068 ~ 5222744 (+) True G1756
TU2209 other upstream 1066431 5034565 ~ 5038714 (+) True G1600
XR_005641751.1 other downstream 276162 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 276162 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 276162 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 276162 6385602 ~ 6402040 (+) False LOC120573424
TU2728 other downstream 319391 6428831 ~ 6436864 (+) False aftpha

Expression Profile