RNA id: TU2552


Basic Information

Item Value
RNA id TU2552
length 3027
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1831
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6004393 ~ 6022020 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcatctgttgacatttccgaatgccttcctacagttgcgtaaagtggccgtagtagttatgacggaagcaaagcaggaagtaaggtgaagTATAAATGTGGCAagtttacagattttattttacaatcaCATAGAGCATTTACAAATTTCTTTAACTCATAAGCTGTCTTACCAGTATTCACAAAACTAATCAAAAGTGaccagtaaaaaaacaaaacaattaaaaaatagaAATCTTCCTTAACTTTTTATATTCGGTATAACAACATGTGTAGATGCTAAAAAAGGCCTTactcttaaataaaaattaataacACAATCAAATATTCAGCAATATTTTTTCTTCGGCTGCATATCAAATTgaaaaatttaaagaaatctacattttttgtgtgcaaaaaataCCCAATTCACTTTAGAAACATTTATTAGTGATTCTTTGAAAGTGAAAAAATGTCTGTGGGTTTAAATAGAAATTCTGTCATGATGCAGAGTTGAAGAGATGAATGCATCAAATCAATTTGTTGCCTATGTAATGGGACACATAATAATCAATCAAAAAAGTGTAAATCAATCACCACAGGAAACAGATtctgtaaacaaataagatgtAAATTATAAAATGTTCATTTCTTCCCTTGAATAGCAATTATTCAATACATGAAATAAGATCAGTGACTAGTTTActctgacaggagagatgatcagagggGCAGAGTTTTTACCACCATCATTATTACAGGGATTGAAGAATgggaagagtttctcagtgaaggagcagccagtaaaggagtagataagagctgcagcatctacgtcataaaaggagaccagaccctcctcataatccacaaacacccccaccttctgagggggagacttcagagagagaaCAGGAAATCATAACATGTACAAACCTCGAGTTTCTTTCTAAGGAAACTGAAGTAGGAATGTTGTCCGTCCAGCATTGGCTCGCCTCCTACTGCAGCTCTGTTATTAGGTTTTGTTTCCTCGTACGTTTTTATTACTTTAGTTACGTACAGATGTTTCCCTGGCTTAACATAAGGTGAAGCTGGTACTGTACCTAACTTCTATGTGAGGTTATTTTGAGGGGAAACCCATACTTGTTAATGAGGAACCACTTGAGTTTGTGGAAGATTTCACCTATCTGGGCAAGGCTGGGAAAGGCTCAGGGTGCCTTCTCCCAACTCCGTCCCATCTGGAgatcaaaacacaaaatagtgGCTAGCAAAAATGCTGCGTCACTAACTAAATAATAGCCAGAGTGGGGAATGTCAAGCCCTGAATGTAGGCCTGTGTAATGAAatgcatacaaaaacacatttctgacTACCTTACCAATTTACTACAGGTGTGACCTCCAAAGAGTTTAAACTGCAGAAACACTGAAGCCcaaaaacaagaagaaagaaaaaaggtgaATGAACTTGTAACAACATGTAcaaactagagatgttccgataccagtatcggtatcggctccgacaCTGCccaaaacgctggtatcggtatcgggaagtactggagtttatgcatcAATCCGATACCGCGTAagaaagccctaaagaaaatctatgttaaagtagtttatttatgttatttttccattataactgactgtcaaactggagaataaaagaaagttctgtggcgttcattgtttgtgtgtgtttatgtttcacaaagagtttaacgtGAGacagactgacaacaaagatagaagtAATATCATATCCATACAGGGACATCAGTacacagttgttaaaacataatacaatataTGAAACACTGGTATCTGATCGGTATTCGGTATCGGATGATACGCAAGTTCaagtatcagaatcggtattgggaagcaaaaaatggtatcgggccatctctagtacAAACCCCATTGGAATGTTGTCTGTCCAGTGTTGCTCTGCCTCTTAACCGCCTCTCTGTTTTTTAGGTTTTGTTTCCTCATATTTAGATATGATTTTAGTAACACTCAGGTGTATAGCGTAGGTGGCTTCTAGGGCTCCAGGAGGGACGTGCACAGACAGGGGGCAGGGGCAGGGGCTCAAAGAAAAAAGGTTCTAGTAATAgaaatttaaacaaaatgttaaataggcctatattaacACATCTGACTACTCtaccaatttattttattttccttgcACAACTGTTTAATAGATTTAATAAATACTCAACAAGTAATCAGTTCACACAGAGATTTTTTAGCATTCACCAGGTTAATCACCATCAGCAAAGGACACTCTGCTACAATGTGCATGTTTCTAGTTTCAATTATATATTTAGAATAAGCCCCAAGGAGATGGACTTAGTTTCACTAAAAATTGGTTTATTTTGCAAATGGCAATAAATCATGATCATTCTTTTGGTGCTATTGAAATAAAttactaagacgagacgatgacgagaatgcaccaatgtccaaaaacgctgactacgactaaattaacatgcattattgttgatgaaaaaagacaagactaaaatgttttgtataaaataaaaactaagataaaatatCTCTTCATTTTTGCCTACAATGTCTATACTTttccatcatgagatagaatattcagctgttacgcCTTCGGgtgtttgactgaaatggttatcagaaataatttatttaaaaaaaagacaaatgttttGACTTAAACTTGACTAAGACATACTGAGTTTTCTTTTAACTAAAAGTAGACTAAAATgatgagacttttagtcgactaaaacttgactaacaaaaaaaaaaaagggtatgtgaatgactaaatatgactgaAACTGACAAGAACagttggcacaagactaagactaaattaaaaacagGTGACAAAATGAACACTAGTGGGGGGGTGATTCAAACTCCACAATCACTGCTGGTGAACACAAACATTTCCTCCTGCCGCtccttcacattaaaagcatcCAACTGGTGAAACACACAgggagcttttattgtgaagcagccaCAGGAAACACAATGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2554 lncRNA upstream 20325 5971225 ~ 5984068 (+) True G1833
TU2595 lncRNA upstream 44292 5897705 ~ 5960101 (+) True G1873
TU2592 lncRNA upstream 45747 5880353 ~ 5958646 (+) True G1871
TU2540 lncRNA upstream 46127 5887302 ~ 5958266 (+) True G1820
TU2617 lncRNA upstream 49130 5941449 ~ 5955263 (+) True G1886
TU2638 lncRNA downstream 17572 6039592 ~ 6130467 (+) True G1897
TU2643 lncRNA downstream 40108 6062128 ~ 6063637 (+) True G1900
TU2640 lncRNA downstream 89194 6111214 ~ 6111601 (+) True G1898
TU2650 lncRNA downstream 97027 6119047 ~ 6119529 (+) True G1905
TU2651 lncRNA downstream 103347 6125367 ~ 6126533 (+) True G1906
XM_039808496.1 mRNA upstream 121970 5876547 ~ 5882423 (+) True snrpb2
XM_039808416.1 mRNA upstream 201159 5790297 ~ 5803234 (+) True LOC120563910
XM_039808423.1 mRNA upstream 201159 5790297 ~ 5803234 (+) False LOC120563910
XM_039809499.1 mRNA upstream 396592 5606454 ~ 5607801 (+) True LOC120564476
XM_039809476.1 mRNA upstream 413385 5589669 ~ 5591008 (+) True LOC120564466
XM_039808449.1 mRNA downstream 17191 6039211 ~ 6058589 (+) True prokr1a
XM_039808345.1 mRNA downstream 66832 6088852 ~ 6093726 (+) True LOC120563871
XM_039808352.1 mRNA downstream 68174 6090194 ~ 6093727 (+) False LOC120563871
XM_039808319.1 mRNA downstream 83125 6105145 ~ 6109440 (+) True LOC120563868
XM_039808329.1 mRNA downstream 83125 6105145 ~ 6109440 (+) False LOC120563868
TU2539 other upstream 88019 5876608 ~ 5916374 (+) False snrpb2
TU2438 other upstream 629486 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 676636 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 781649 5218068 ~ 5222744 (+) True G1756
TU2209 other upstream 965679 5034565 ~ 5038714 (+) True G1600
XR_005641751.1 other downstream 363582 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 363582 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 363582 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 363582 6385602 ~ 6402040 (+) False LOC120573424
TU2728 other downstream 406811 6428831 ~ 6436864 (+) False aftpha

Expression Profile