RNA id: XM_039817350.1


Basic Information

Item Value
RNA id XM_039817350.1
length 1741
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC120569490
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6338303 ~ 6377691 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGCGTCTCCGCGTGGCCTTCAGCCTGGGcgccatcctcctcctcttctccctcaCGGCCGCCCTGGTCCGGGTCCCCATGCTGCCGGACACCTTCTTCTCCGTCACCATGGCAACCATCTGGTTCATCAACAcgTTGGCGGGCAGTGCTCCAGGGCAGCCTGTTCGGGATGGTCGGTCTGTTCCCCCCCCGTTACAGCACCCTGTTCATGAGCGGTCAGGGTCTGGCCGGGATCTTCGCCGCGCTCGCCATGCTCCTCTCCATCCTGAGTAACTCGGGGGAAAGATCGGCTGCTTTGGGGTACTTCATCACGCCCTGTGTGGCCACCCTGGGGACTCTGCTGTGTTACCTGCTGCTGCCACACCTGGAATTCGCTCGTTTCTACCTGAACAGAAGTCAGTCTGATAACCTGGAGACCAAACAGGAAGTCCTCAGCAGCACAGACATGAACGACCTCGAGGTGGACAGGAAGTTCATCGGGGAGCCAGAGGAGAGCCAGCAGCGCTCGTCCGTCCTGAACGTCTTCAAGAAGATCTGGCTGATGGCTGCGTGTGTGACGTGCGTGTTCGCCGTCACCCTGTCGGTGTTTCCCGTGATCACGGTGCGAGTTCGGACCGTCTACACGGACAGCGCCGCCTGGGACAAAGTGTTCACCTGCGTTTGCTGCTTCATCGTTTTCAACGCCATGGACTTGGTCGGCCGCAGCGCCCCGTCTCTCGTCCAATGGCCTTCGAAGGAGAGCCGTGTGTTTCCTGTCGCGGTGTTGTCCCGTGTGGTCTTCATCCCTCTGCTCATGATGTGTAACGTCCAGGACTCCAGACTCTCCGTCTTCAGGCACGTCTTCCGCCACGACGGCGCCTTCGTCACCATCATGGCCCTGTTTTCCTTCTCCAACGGCTACCTGGCGAGCCTCTGCATGGCCTACGCTCCGCAgttagTGCGGAGTAAAGACTGCGAGACGGCCGGGTCCCTGATGACCTTCTTCCTGGTTCTGGGTCTGGCGCTGGGAGCGTCTTTCTCCTTCCTACTGGGACAACTGGTCTAGACGACCAGGGACGAGCACACAGCCTGAAACTCAAACAAGGACAAAAGCACCAAGATGTGATGAAATGTCAGTTTCATCCTGTCAAAAGAAGGCAAGccaattttattcatttattttattatagcacatttcagcagcgGTGCAAAATTAGAAATGAATACAAGTTAATACAGAAGTTAATACAGAAGCAGTTCATACacaattaaaaacagttaatcaAAATTAGATTAAATACAGGAATAGAAGAATAAAATTCCCAGTGCAGTGCAAAGAATTAAACAAAGGCAGTATcgaaaaagaaaggtcttcagccttgattttaAAGAGCTGAGCGTGTAGGTGCCGACCTACAGTTTACCTTCCACACACAGATATACGTGGAGCGTAGAAACTGAACGCAGCttcctcccttttttttgttctgaTTCTGGGGAAGgccaagcagacctgtccctgAGGATCTCAGAGGCCTTCTGCGGTTCATAACAAGTAGATCCGAAAGGTAATTTGGCCCtagtcaaactcagtttcccagagggccacactggaaaaagagaatcgcaCCGAGGGGCCAGACATGTGGAGTTTATTGAGGTGCTTTTTGTTACTGTGTGTCactgtttttaaaacattttggtatttttttcctcatttttcttGGTTTtcttcagactttttttgtggctttctcaga

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG:

id description
K15014 SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2697 lncRNA upstream 21571 6275673 ~ 6316732 (+) True G1927
TU2698 lncRNA upstream 21571 6316262 ~ 6316732 (+) False G1927
TU2699 lncRNA upstream 21571 6316262 ~ 6316732 (+) False G1927
TU2667 lncRNA upstream 50134 6234343 ~ 6288169 (+) False G1915
TU2668 lncRNA upstream 50134 6234343 ~ 6288169 (+) False G1915
TU2719 lncRNA downstream 15385 6393076 ~ 6393584 (+) True G1936
TU2704 lncRNA downstream 87748 6465439 ~ 6466386 (+) True G1932
TU2772 lncRNA downstream 179915 6557606 ~ 6557845 (+) True G1983
TU3135 lncRNA downstream 204434 6582125 ~ 6582434 (+) True G2230
TU3148 lncRNA downstream 253982 6631673 ~ 6632069 (+) True G2241
XM_039808508.1 mRNA upstream 105704 6163406 ~ 6232599 (+) True ppp3r1b
XM_039808518.1 mRNA upstream 105704 6223422 ~ 6232599 (+) False ppp3r1b
XM_039808530.1 mRNA upstream 180912 6148380 ~ 6157391 (+) True cnrip1a
XM_039808483.1 mRNA upstream 192276 6132635 ~ 6146027 (+) False LOC120563935
XM_039808473.1 mRNA upstream 196757 6132635 ~ 6141546 (+) True LOC120563935
XM_039823827.1 mRNA downstream 7910 6385601 ~ 6402640 (+) False LOC120573424
XM_039823751.1 mRNA downstream 7910 6385601 ~ 6402040 (+) False LOC120573424
XM_039823636.1 mRNA downstream 7910 6385601 ~ 6401818 (+) False LOC120573424
XM_039823410.1 mRNA downstream 7911 6385602 ~ 6401818 (+) False LOC120573424
XM_039823185.1 mRNA downstream 7911 6385602 ~ 6401818 (+) False LOC120573424
TU2539 other upstream 421929 5876608 ~ 5916374 (+) False snrpb2
TU2438 other upstream 963396 5372617 ~ 5374907 (+) True G1775
TU2415 other upstream 1010546 5235346 ~ 5327757 (+) False LOC120563544
TU2407 other upstream 1115559 5218068 ~ 5222744 (+) True G1756
TU2209 other upstream 1299589 5034565 ~ 5038714 (+) True G1600
XR_005641751.1 other downstream 7911 6385602 ~ 6402640 (+) True LOC120573424
XR_005641779.1 other downstream 7911 6385602 ~ 6402640 (+) False LOC120573424
XR_005641746.1 other downstream 7911 6385602 ~ 6402040 (+) False LOC120573424
XR_005641785.1 other downstream 7911 6385602 ~ 6402040 (+) False LOC120573424
TU2728 other downstream 51140 6428831 ~ 6436864 (+) False aftpha

Expression Profile